CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48210	Soybean	nucleus	69.93	95.94
VIT_01s0010g01890.t01	Wine grape	nucleus	75.63	80.78
Solyc10g007550.2.1	Tomato	cytosol, nucleus	79.5	79.5
CDY42845	Canola	cytosol	77.45	75.72
CDY47007	Canola	cytosol	77.45	75.72
Bra029342.1-P	Field mustard	cytosol	77.22	75.0
AT5G60990.1	Thale cress	nucleus	77.45	74.56
VIT_11s0065g01090.t01	Wine grape	cytosol	79.95	65.12
OQU93356	Sorghum	cytosol	64.69	62.56
TraesCS2A01G128700.1	Wheat	nucleus	64.46	61.79
TraesCS6A01G114900.1	Wheat	nucleus	64.24	61.71
TraesCS2D01G131200.1	Wheat	nucleus	64.24	61.57
KXG22990	Sorghum	cytosol	61.73	60.9
Zm00001d014787_P001	Maize	nucleus	64.46	60.86
TraesCS6D01G103400.1	Wheat	nucleus	61.28	60.59
Zm00001d048477_P001	Maize	plastid	25.51	59.89
Os03t0669000-01	Rice	cytosol, nucleus, plastid	63.1	58.69
TraesCS6B01G142500.1	Wheat	mitochondrion, nucleus	63.55	58.12
Os07t0660000-00	Rice	cytosol	58.09	57.3
TraesCS2B01G150800.1	Wheat	mitochondrion	64.24	54.65
HORVU2Hr1G022490.2	Barley	nucleus	60.82	54.16
HORVU6Hr1G020570.1	Barley	plastid	63.78	49.47
GSMUA_Achr8P34380_001	Banana	cytosol	72.89	44.02
KRH43700	Soybean	cytosol	45.79	34.3
KRH13749	Soybean	cytosol, plastid	45.33	33.67
KRH62970	Soybean	nucleus	33.94	27.49
KRH37970	Soybean	cytosol	19.82	27.19
KRH56711	Soybean	nucleus	34.85	26.75
KRH03838	Soybean	nucleus	34.85	26.61
KRH54795	Soybean	nucleus	33.03	26.51
KRH37539	Soybean	nucleus	32.35	26.35
KRH12590	Soybean	nucleus	31.89	25.78
KRG97683	Soybean	nucleus	34.17	25.47
KRH31184	Soybean	nucleus	33.49	22.11
KRH37947	Soybean	plastid	29.16	21.73
KRH46113	Soybean	nucleus	34.85	20.21
KRG98832	Soybean	nucleus	34.62	20.03
KRH73730	Soybean	nucleus	32.35	19.03
KRH54980	Soybean	nucleus	7.52	18.54
KRH48208	Soybean	nucleus	33.94	18.4
KRH47920	Soybean	nucleus	29.16	18.21
KRH41139	Soybean	nucleus	28.7	17.82
KRH09570	Soybean	nucleus	31.44	17.76
KRH65117	Soybean	plastid	33.26	17.72
KRH64859	Soybean	nucleus	30.98	17.5
KRH14417	Soybean	cytosol, nucleus	20.5	17.05
KRH06491	Soybean	nucleus	28.7	15.63
KRH59841	Soybean	nucleus	18.22	15.12

Protein Annotations

EntrezGene:100775796	Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02001314	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_03G014900
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	UniProt:K7KC67	ProteinID:KRH65119.1	EnsemblPlants:KRH65120	ProteinID:KRH65120
ProteinID:KRH65120.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF78	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000233A19D	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:-:1494708..1502910

Molecular Weight (calculated)

49259.2 Da

IEP (calculated)

9.223

GRAVY (calculated)

-0.285

Length

439 amino acids

Sequence
(BLAST)

001: MGEENEETKT FKDLGLSESL VEACEKLGWK NPLKIQTEAI PLALEGKDVI GLAQTGSGKT GAFALPILHA LLEAPRPKDF FACVLSPTRE LAIQIAEQFE
101: ALGSEIGVKC AVLVGGIDMV QQSIKIAKQP HIIVGTPGRV IDHLKHTKGF SLSRLKYLVL DEADRLLNED FEESLNEILQ MIPRERRTFL FSATMTKKVQ
201: KLQRVCLRNP VKIEASSKYS TVDTLKQQYR FLPAKHKDCY LVYILTEMAG STSMVFTRTC DATRLLALIL RNLGLKAIPI NGHMSQSKRL GALNKFKSGE
301: CNILLCTDVA SRGLDIPTVD MVINYDIPTN SKDYIHRVGR TARAGRSGVA ISLVNQYELE WYIQIEKLIG KKLPEYPAQE EEVLLLEERV GEAKRLAVMK
401: MKETGGKKKR RGEEDYDGED IDKYLGLKEG KSSKKFRRR

Best Arabidopsis Sequence Match ( AT5G60990.1 )
(BLAST)

001: MEEENEVVKT FAELGVREEL VKACERLGWK NPSKIQAEAL PFALEGKDVI GLAQTGSGKT GAFAIPILQA LLEYVYDSEP KKGRRPDPAF FACVLSPTRE
101: LAIQIAEQFE ALGADISLRC AVLVGGIDRM QQTIALGKRP HVIVATPGRL WDHMSDTKGF SLKSLKYLVL DEADRLLNED FEKSLNQILE EIPLERKTFL
201: FSATMTKKVR KLQRACLRNP VKIEAASKYS TVDTLKQQYR FVAAKYKDCY LVYILSEMPE STSMIFTRTC DGTRFLALVL RSLGFRAIPI SGQMTQSKRL
301: GALNKFKAGE CNILVCTDVA SRGLDIPSVD VVINYDIPTN SKDYIHRVGR TARAGRSGVG ISLVNQYELE WYIQIEKLIG KKLPEYPAEE DEVLSLLERV
401: AEAKKLSAMN MKESGGRKRR GEDDEESERF LGGNKDRGNK ERGGNKDKKS SKKFKR

Arabidopsis Description

RH10DEAD-box ATP-dependent RNA helicase 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8GY84]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.