CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
mitochondrion 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41139	Soybean	nucleus	86.39	64.64
VIT_02s0025g03950.t01	Wine grape	mitochondrion	57.28	40.19
GSMUA_Achr3P14380_001	Banana	cytosol	33.27	39.37
CDY49890	Canola	mitochondrion	55.2	37.44
Bra027808.1-P	Field mustard	mitochondrion	54.82	37.13
CDY45370	Canola	mitochondrion	54.63	36.96
PGSC0003DMT400010896	Potato	cytosol, nucleus, plastid	54.44	35.73
Solyc12g056340.1.1	Tomato	cytosol, nucleus, plastid	54.25	35.65
AT1G63250.1	Thale cress	mitochondrion	52.55	34.84
Os02t0826100-01	Rice	cytosol	52.74	34.4
EES07789	Sorghum	mitochondrion	53.5	34.39
Zm00001d018516_P002	Maize	mitochondrion	52.74	34.11
AT2G07750.1	Thale cress	plastid	52.74	33.02
TraesCS6D01G392700.1	Wheat	cytosol	51.8	32.54
TraesCS6B01G455000.1	Wheat	cytosol	51.8	32.5
TraesCS6A01G409100.1	Wheat	cytosol	51.98	31.04
HORVU6Hr1G093300.7	Barley	cytosol, nucleus	43.67	30.39
KRH37970	Soybean	cytosol	17.2	28.44
KRH47920	Soybean	nucleus	32.89	24.75
KRH06491	Soybean	nucleus	33.65	22.08
KRH65120	Soybean	cytosol	15.12	18.22
KRH56711	Soybean	nucleus	18.9	17.48
KRH03838	Soybean	nucleus	18.9	17.39
KRH62970	Soybean	nucleus	17.77	17.34
KRH54795	Soybean	nucleus	17.58	17.0
KRH37539	Soybean	nucleus	16.64	16.33
KRH12590	Soybean	nucleus	14.93	14.55
KRH48210	Soybean	nucleus	8.13	13.44
KRG97683	Soybean	nucleus	14.74	13.24
KRH46113	Soybean	nucleus	18.71	13.08
KRG98832	Soybean	nucleus	18.71	13.04
KRH73730	Soybean	nucleus	17.39	12.33
KRH43700	Soybean	cytosol	13.61	12.29
KRH37947	Soybean	plastid	13.61	12.22
KRH13749	Soybean	cytosol, plastid	13.42	12.01
KRH31184	Soybean	nucleus	14.37	11.43
KRH48208	Soybean	nucleus	15.69	10.25
KRH65117	Soybean	plastid	15.88	10.19
KRH64859	Soybean	nucleus	14.74	10.04
KRH09570	Soybean	nucleus	14.56	9.91
KRH14417	Soybean	cytosol, nucleus	6.62	6.63
VIT_06s0004g07260.t01	Wine grape	extracellular, vacuole	0.57	1.88
KRH54980	Soybean	nucleus	0.38	1.12

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A0R0JYT1	EMBL:ACUP02003342	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_05G205500
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:KRH59841	ProteinID:KRH59841
ProteinID:KRH59841.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFscan:PS51192	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF324	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SUPFAM:SSF52540	UniParc:UPI0006ED92FF	SEG:seg

Description

hypothetical protein

Coordinates

chr5:-:38851118..38854031

Molecular Weight (calculated)

60121.8 Da

IEP (calculated)

9.926

GRAVY (calculated)

-0.433

Length

529 amino acids

Sequence
(BLAST)

001: MWGWMVGEAR RAACNWNWVS LRSMGGGPRT FPGGVNKWKW KRMHEKLARD KQNRLIQQEK QLYPARIRSH IRSSLSPDHR SAAAATHRPL SPNDHFKALA
101: DRFVKDGAED LWNNHDGPLT PNPTTPNLDF CPKHTRGYRA VPEVGNSRVG AHKYRFWRKG SDDSSSGESE SEIEVELSMK KRGSSASLGE YDVKRERRVV
201: PKTSPEFEFI SYELNKRKLS QIEDQQRCGR DGDENRKGLK WLMQPQLCLQ SLDECGISPL TVKALSSAGY VHMTRIREAS LPICLEGMDA VVKAKTGTGK
301: NVAFLLPAIE TVLKAMSSNT SQRVPPIYVL ILCPTRELAN QVAAVAKVLL KYHDAIRVQT LVGGIRFKVD QKRLESDPCQ ILVATPGRLL DHIENKSGIS
401: LRLMGLRTLV LDEADHLLDL GFRKDVEKIV DCLPRQQQSL LFSATIPKEV RCVSQLVLKR EHKYVDTVGM GCVETPVKVK QSYLIAPHES HFQLVHHILK
501: EHILQTPDYK VKHRCCFRFQ IALLYILWF

Best Arabidopsis Sequence Match ( AT1G63250.1 )
(BLAST)

001: MYSLILRERS GSITGSLWNR ISSRNMGGGP RTFPGGLNKW QWKRMHEKKA REKENKLLDQ EKQLYEARIR TEIRAKMWGN PDSGEKTAKS KQSHGPMSPK
101: EHIKTLADRF MKAGAEDFWN ENDGPVKKSD QGSRSGSDSI DSTSNSPIDV RRLVSATCDS MGKNRVFGSS RRGFSSMSRF KRNESSCDEG DDFDAKKLDT
201: LSPFSPKFAG TKEKVKSSRS VVGVIRNKGL FGRRKFRKND SSTEEDSDEE GDEGKMIGWM DMRKTGSSAS LGNHDIKLTK RVNRNVTDEE LYPPLDINTV
301: REDLSKRKSV DNVMEEKQEP HDSIYSAKRF DESCISPLTL KALSASGILK MTRVQDATLS ECLDGKDALV KAKTGTGKSM AFLLPAIETV LKAMNSGKGV
401: NKVAPIFALI LCPTRELASQ IAAEGKALLK FHDGIGVQTL IGGTRFKLDQ QRLESEPCQI LIATPGRLLD HIENKSGLTS RLMALKLFIV DEADLLLDLG
501: FRRDVEKIID CLPRQRQSLL FSATIPKEVR RVSQLVLKRD HSYIDTIGLG CVETHDKVRQ SCIVAPHESH FHLVPHLLKE HINNTPDYKI IVFCSTGMVT
601: SLMYTLLREM KLNVREIHAR KPQLHRTRVS DEFKESNRLI LVTSDVSARG MNYPDVTLVI QVGIPSDREQ YIHRLGRTGR EGKGGEGLLL IAPWERYFLD
701: ELKDLPLEPI PAPDLDSIVK HQVDQSMAKI DTSIKEAAYH AWLGYYNSVR ETGRDKTTLA ELANRFCHSI GLEKPPALFR RTAVKMGLKG ISGIPIRK

Arabidopsis Description

RH48Probable DEAD-box ATP-dependent RNA helicase 48 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8S9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.