Factsheet for Bra027808.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45370	Canola	mitochondrion	99.49	99.36
CDY49890	Canola	mitochondrion	97.7	97.82
AT1G63250.1	Thale cress	mitochondrion	86.94	85.09
AT2G07750.1	Thale cress	plastid	85.28	78.82
GSMUA_Achr3P14380_001	Banana	cytosol	40.72	71.14
KRH41139	Soybean	nucleus	59.15	65.35
VIT_02s0025g03950.t01	Wine grape	mitochondrion	61.08	63.26
VIT_06s0004g07260.t01	Wine grape	extracellular, vacuole	12.42	60.62
Solyc12g056340.1.1	Tomato	cytosol, nucleus, plastid	58.51	56.77
PGSC0003DMT400010896	Potato	cytosol, nucleus, plastid	58.51	56.7
KRH59841	Soybean	nucleus	37.13	54.82
EES07789	Sorghum	mitochondrion	55.57	52.73
Os02t0826100-01	Rice	cytosol	54.42	52.4
Zm00001d018516_P002	Maize	mitochondrion	54.16	51.71
TraesCS6D01G392700.1	Wheat	cytosol	53.39	49.52
TraesCS6B01G455000.1	Wheat	cytosol	53.14	49.23
Bra028652.1-P	Field mustard	nucleus	33.67	48.61
HORVU6Hr1G093300.7	Barley	cytosol, nucleus	46.86	48.16
Bra009356.1-P	Field mustard	cytosol	34.31	47.77
TraesCS6A01G409100.1	Wheat	cytosol	53.27	46.95
Bra009355.1-P	Field mustard	mitochondrion, plastid	38.8	39.76
Bra038650.1-P	Field mustard	mitochondrion	37.13	39.03
Bra024428.1-P	Field mustard	nucleus	19.72	26.06
Bra029342.1-P	Field mustard	cytosol	14.98	25.89
Bra022336.1-P	Field mustard	nucleus	18.57	25.53
Bra037574.1-P	Field mustard	nucleus	18.44	25.44
Bra026724.1-P	Field mustard	nucleus	15.49	24.9
Bra001713.1-P	Field mustard	nucleus	18.44	23.76
Bra028757.1-P	Field mustard	nucleus	16.13	21.21
Bra009114.1-P	Field mustard	nucleus	15.75	20.67
Bra004584.1-P	Field mustard	nucleus	16.13	20.52
Bra002946.1-P	Field mustard	nucleus	18.95	19.89
Bra021205.1-P	Field mustard	mitochondrion, nucleus, plastid	15.49	19.24
KRH54980	Soybean	nucleus	4.23	18.54
Bra040743.1-P	Field mustard	nucleus	17.16	15.33
Bra003691.1-P	Field mustard	cytosol	14.72	13.5
Bra038492.1-P	Field mustard	nucleus	15.49	13.33

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra027808	EnsemblPlants:Bra027808.1	EnsemblPlants:Bra027808.1-P	ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M4EG94
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF324	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI0002541A72	SEG:seg	:	:	:	:

Description

AT2G07750 (E=0.0) | DEAD box RNA helicase, putative

Coordinates

chrA09:-:6023814..6026759

Molecular Weight (calculated)

87977.8 Da

IEP (calculated)

9.874

GRAVY (calculated)

-0.547

Length

781 amino acids

Sequence
(BLAST)

001: MYSTILRERS GSIWSLILSR NMGGGPRTFP GGLNKWQWKR MHEKKAREKE NKLLDQEKQL YEARIRSEIR AKMLGGNHDS NETKAKSNQS HGPLSPQEHI
101: KSLADRFMKA GAEDLWNEDD GPVKKTNQGS RLNRVGNGGS RSNSPIDVRS LVGRRGFSSV SHRGRFKRNE SSCDEGEDFD SKKFDTLSPF SPGFAGKKEK
201: VKSVSNVMRN KGLFGRRKFR KNDSSTEEDS EEDEGDGKMN GWMDVRRTGS SASLGNHDFK LIKRVQRNVT DEELYPPLDI NDVRDDLSKR KSVENVMEVD
301: GEPSDSIYSG RRFDESSISP LTLKALSASG IVKMTRVQDA TLSECFEGQD ALVKAKTGTG KSMAFLLPAI ETVLKAMEIS NGVHRVPPIL VLILCPTREL
401: ASQIAAEGKA LLKYHEGIGV QTLIGGTRFK LDQQRLQSDP CQILIATPGR LLDHIENKSN ITSRLMALKL FVVDEADLLL DLGFRRDVEK IIDCLPRQRQ
501: SLLFSATIPK EVRRVSQLVL KRDHSYIDTI GLGCVETHDK VKQSCLVAPH ESHFHLVPHL LKEHINNTVD YKIIVFCSTG MVTSLMYTLL REMKLNVREI
601: HARKPQLHRT RVSDEFKESK RLILVTSDVS ARGMNYPDVT LVIQVGIPSD REQYIHRLGR TGREGKGGKG LLLIAPWERY FLDELKDLPI EPVPVPDLDS
701: RFKLEVDQSM GKIDTSIKEA AYHAWLGYYN SVRETGRDKT TLAELANRFC YSIGLEKPPP LFRKTAVKMG LKGISGIPIR K

Best Arabidopsis Sequence Match ( AT1G63250.1 )
(BLAST)

001: MYSLILRERS GSITGSLWNR ISSRNMGGGP RTFPGGLNKW QWKRMHEKKA REKENKLLDQ EKQLYEARIR TEIRAKMWGN PDSGEKTAKS KQSHGPMSPK
101: EHIKTLADRF MKAGAEDFWN ENDGPVKKSD QGSRSGSDSI DSTSNSPIDV RRLVSATCDS MGKNRVFGSS RRGFSSMSRF KRNESSCDEG DDFDAKKLDT
201: LSPFSPKFAG TKEKVKSSRS VVGVIRNKGL FGRRKFRKND SSTEEDSDEE GDEGKMIGWM DMRKTGSSAS LGNHDIKLTK RVNRNVTDEE LYPPLDINTV
301: REDLSKRKSV DNVMEEKQEP HDSIYSAKRF DESCISPLTL KALSASGILK MTRVQDATLS ECLDGKDALV KAKTGTGKSM AFLLPAIETV LKAMNSGKGV
401: NKVAPIFALI LCPTRELASQ IAAEGKALLK FHDGIGVQTL IGGTRFKLDQ QRLESEPCQI LIATPGRLLD HIENKSGLTS RLMALKLFIV DEADLLLDLG
501: FRRDVEKIID CLPRQRQSLL FSATIPKEVR RVSQLVLKRD HSYIDTIGLG CVETHDKVRQ SCIVAPHESH FHLVPHLLKE HINNTPDYKI IVFCSTGMVT
601: SLMYTLLREM KLNVREIHAR KPQLHRTRVS DEFKESNRLI LVTSDVSARG MNYPDVTLVI QVGIPSDREQ YIHRLGRTGR EGKGGEGLLL IAPWERYFLD
701: ELKDLPLEPI PAPDLDSIVK HQVDQSMAKI DTSIKEAAYH AWLGYYNSVR ETGRDKTTLA ELANRFCHSI GLEKPPALFR RTAVKMGLKG ISGIPIRK

Arabidopsis Description

RH48Probable DEAD-box ATP-dependent RNA helicase 48 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8S9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.