Factsheet for Bra004584.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G40700.1	Thale cress	nucleus	87.78	88.36
CDX79974	Canola	nucleus	98.37	87.79
CDY23886	Canola	plasma membrane	97.23	85.16
KRH12590	Soybean	nucleus	61.24	69.24
VIT_11s0016g00630.t01	Wine grape	nucleus	65.8	67.33
KRH37539	Soybean	nucleus	58.63	66.79
PGSC0003DMT400006153	Potato	nucleus	56.35	64.79
Solyc07g042270.2.1	Tomato	nucleus	62.54	64.32
PGSC0003DMT400006154	Potato	nucleus	61.73	63.48
GSMUA_Achr7P18160_001	Banana	nucleus	56.84	59.76
EES18259	Sorghum	nucleus	58.31	59.67
Os05t0110500-02	Rice	nucleus	57.17	59.39
Zm00001d010225_P001	Maize	plasma membrane	48.86	58.37
TraesCS1A01G030500.1	Wheat	nucleus	57.65	57.84
TraesCS1B01G037600.1	Wheat	nucleus	57.98	57.79
TraesCS1D01G031400.1	Wheat	nucleus	57.49	57.68
HORVU1Hr1G004510.5	Barley	plastid	57.65	53.64
Bra022336.1-P	Field mustard	nucleus	29.8	32.22
Bra037574.1-P	Field mustard	nucleus	29.48	31.98
Bra024428.1-P	Field mustard	nucleus	30.13	31.3
Bra029342.1-P	Field mustard	cytosol	22.64	30.75
Bra001713.1-P	Field mustard	nucleus	29.48	29.87
Bra026724.1-P	Field mustard	nucleus	21.82	27.57
Bra028652.1-P	Field mustard	nucleus	22.31	25.32
Bra009356.1-P	Field mustard	cytosol	23.13	25.31
Bra028757.1-P	Field mustard	nucleus	22.96	23.74
Bra009114.1-P	Field mustard	nucleus	21.99	22.69
Bra002946.1-P	Field mustard	nucleus	25.41	20.97
Bra021205.1-P	Field mustard	mitochondrion, nucleus, plastid	21.01	20.51
Bra038650.1-P	Field mustard	mitochondrion	23.62	19.52
Bra009355.1-P	Field mustard	mitochondrion, plastid	23.13	18.64
Bra040743.1-P	Field mustard	nucleus	23.94	16.82
Bra003691.1-P	Field mustard	cytosol	22.64	16.31
Bra027808.1-P	Field mustard	mitochondrion	20.52	16.13
Bra038492.1-P	Field mustard	nucleus	21.99	14.87

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra004584	EnsemblPlants:Bra004584.1	EnsemblPlants:Bra004584.1-P	InterPro:DEAD/DEAH_box_helicase_dom
InterPro:DUF4217	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M4CK50	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFAM:PF13959	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF54	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SMART:SM01178	SUPFAM:SSF52540
UniParc:UPI000254758D	SEG:seg	:	:	:	:

Description

AT2G40700 (E=8e-303) | DEAD/DEAH box helicase, putative (RH17)

Coordinates

chrA05:+:892811..895606

Molecular Weight (calculated)

69186.7 Da

IEP (calculated)

9.895

GRAVY (calculated)

-0.441

Length

614 amino acids

Sequence
(BLAST)

001: MVKRTQQPAR DSKQEAKDVN KSKNGLFASC TFSSLGLDPK LSDQLQERMG FEAPTHVQAQ SIPVILSGRD VLVNAATGTG KTIAYLAPII HHLQAYSPKV
101: DRSHGTFALV IVPTRELCLQ VYETLEKLLH RFHWIVPGYV MGGEKKAKEK ARLRKGISIL IATPGRLLDH LKNTASFEHK NLRWVIFDEA DCILEMGYGK
201: ETEQIIKLLG SRQYEEGDDD DVVVPKGAQK QTLLLSATLN EKVNHLAKLS LDDPVMIGLD NSKTQQKQLP IESPASPDSD EDEMVIHVNK SANPSSEDYG
301: IPSQLVQKYV KVPCGARLVA LLSVLKNLFE REASQKVVVF FSTRDAVDFH HSLLSEFQWP PKSETQEEEE ATKQLFLKCK TFRLHGSMEQ EDRRSAFANF
401: KAEKQALLLS TDVAARGLDF PKVRCIIQYD CPGEATEYVH RVGRTARIGE KGEALLFLQP VEIDYLKDLK KHGATLAEYP LLKVLDKFPL LGNMPRIKKV
501: ISLESHPWVI SLQRALEFFT YAEPKMKNLA KNAFVSWVRG YAAHKGELKS IFVVKKLHLG HVAKSFALKE QPSLVGKSHH KETMKRKRDE RQRGQHPKKR
601: KKMSGGNSRS TTKT

Best Arabidopsis Sequence Match ( AT2G40700.1 )
(BLAST)

001: MMKRAQQSAR ETKQEAKDAS KAKSGLFASC SFSSLGLDTK LSDQLKERMG FEAPTLVQAQ AIPVILSGRD VLVNAPTGTG KTIAYLAPLI HHLQGHSPKV
101: DRSHGTFALV IVPTRELCLQ VYETLEKLLH RFHWIVPGYV MGGEKKAKEK ARLRKGISIL IATPGRLLDH LKNTASFVHK NLRWVIFDEA DSILELGYGK
201: EIEQIIKLLG SGQNEQGEED DIVPKGIQKQ NLLLSATLND KVNDLAKLSL DDPVMIGLDN TKLQQNLSIE SPAAPDSDAE DMVIHVNKSA NPLSEDYGIP
301: SQLVQRYLRV PCGARLVALL SVLKNLFERE ASQKVVVFFS TRDAVDFHYS LLSEFQWPPN SETEEEGTKE LFLKCKTFRL HGSMEQEDRR SAFGTFKTEK
401: QAVLLSTDVA ARGLDFPKVR CIIQYDCPGE ATEYVHRVGR TARIGEKGEA LLFLQPIEID YLKELKKHGA SLTEYPLMKV LDKFPIPGNM PRIKKVLSLE
501: SHPWVISLQR ALESLTYAEP KMKSLAKNAF VSWVRGYAAH KGELKSIFVV KKLHLGHVAK SFALREQPSL VGKSHHKETM KRKRDERQKG QQGKKRKKMS
601: GTGNRSTQKT

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT2G40700]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.