Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004584.1-P | Field mustard | nucleus | 88.36 | 87.78 |
| CDX79974 | Canola | nucleus | 88.52 | 78.49 |
| CDY23886 | Canola | plasma membrane | 88.69 | 77.18 |
| KRH12590 | Soybean | nucleus | 60.98 | 68.51 |
| KRH37539 | Soybean | nucleus | 58.85 | 66.6 |
| VIT_11s0016g00630.t01 | Wine grape | nucleus | 64.92 | 66.0 |
| PGSC0003DMT400006153 | Potato | nucleus | 56.56 | 64.61 |
| Solyc07g042270.2.1 | Tomato | nucleus | 62.79 | 64.15 |
| PGSC0003DMT400006154 | Potato | nucleus | 62.62 | 63.99 |
| GSMUA_Achr7P18160_001 | Banana | nucleus | 56.72 | 59.25 |
| Os05t0110500-02 | Rice | nucleus | 57.05 | 58.88 |
| EES18259 | Sorghum | nucleus | 57.87 | 58.83 |
| Zm00001d010225_P001 | Maize | plasma membrane | 48.52 | 57.59 |
| TraesCS1D01G031400.1 | Wheat | nucleus | 57.05 | 56.86 |
| TraesCS1A01G030500.1 | Wheat | nucleus | 56.89 | 56.7 |
| TraesCS1B01G037600.1 | Wheat | nucleus | 56.89 | 56.33 |
| HORVU1Hr1G004510.5 | Barley | plastid | 56.89 | 52.58 |
| AT3G18600.1 | Thale cress | nucleus | 30.66 | 32.92 |
| AT5G60990.1 | Thale cress | nucleus | 22.3 | 29.82 |
| AT5G65900.1 | Thale cress | nucleus | 29.51 | 28.44 |
| AT1G16280.1 | Thale cress | nucleus | 22.13 | 27.49 |
| AT1G71370.1 | Thale cress | nucleus | 23.28 | 25.45 |
| AT1G71280.1 | Thale cress | nucleus | 19.02 | 24.95 |
| AT5G08620.1 | Thale cress | nucleus | 22.46 | 24.33 |
| AT5G05450.1 | Thale cress | nucleus | 22.46 | 23.1 |
| AT5G54910.1 | Thale cress | nucleus | 26.56 | 21.92 |
| AT5G63630.2 | Thale cress | mitochondrion, plastid | 23.61 | 20.11 |
| AT4G16630.1 | Thale cress | nucleus | 23.93 | 18.5 |
| AT1G63250.1 | Thale cress | mitochondrion | 21.8 | 16.67 |
| AT1G77030.1 | Thale cress | nucleus | 22.95 | 16.57 |
| AT5G08610.1 | Thale cress | mitochondrion, plastid | 22.95 | 16.47 |
| AT3G16840.2 | Thale cress | nucleus | 21.97 | 16.2 |
| AT2G07750.1 | Thale cress | plastid | 21.31 | 15.38 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:818665 | UniProt:A0A2H1ZE38 | ProteinID:AEC09865.2 | ArrayExpress:AT2G40700 |
| EnsemblPlantsGene:AT2G40700 | RefSeq:AT2G40700 | TAIR:AT2G40700 | RefSeq:AT2G40700-TAIR-G | EnsemblPlants:AT2G40700.1 | TAIR:AT2G40700.1 |
| ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF4217 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004004 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010501 | GO:GO:0016787 |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | RefSeq:NP_181602.2 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF13959 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS51192 |
| PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF54 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 |
| SMART:SM00490 | SMART:SM01178 | SUPFAM:SSF52540 | UniParc:UPI0008488E46 | SEG:seg | : |
Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT2G40700]
Coordinates
chr2:+:16976636..16979650
Molecular Weight (calculated)
68348.9 Da
IEP (calculated)
9.970
GRAVY (calculated)
-0.391
Length
610 amino acids
Sequence
(BLAST)
(BLAST)
001: MMKRAQQSAR ETKQEAKDAS KAKSGLFASC SFSSLGLDTK LSDQLKERMG FEAPTLVQAQ AIPVILSGRD VLVNAPTGTG KTIAYLAPLI HHLQGHSPKV
101: DRSHGTFALV IVPTRELCLQ VYETLEKLLH RFHWIVPGYV MGGEKKAKEK ARLRKGISIL IATPGRLLDH LKNTASFVHK NLRWVIFDEA DSILELGYGK
201: EIEQIIKLLG SGQNEQGEED DIVPKGIQKQ NLLLSATLND KVNDLAKLSL DDPVMIGLDN TKLQQNLSIE SPAAPDSDAE DMVIHVNKSA NPLSEDYGIP
301: SQLVQRYLRV PCGARLVALL SVLKNLFERE ASQKVVVFFS TRDAVDFHYS LLSEFQWPPN SETEEEGTKE LFLKCKTFRL HGSMEQEDRR SAFGTFKTEK
401: QAVLLSTDVA ARGLDFPKVR CIIQYDCPGE ATEYVHRVGR TARIGEKGEA LLFLQPIEID YLKELKKHGA SLTEYPLMKV LDKFPIPGNM PRIKKVLSLE
501: SHPWVISLQR ALESLTYAEP KMKSLAKNAF VSWVRGYAAH KGELKSIFVV KKLHLGHVAK SFALREQPSL VGKSHHKETM KRKRDERQKG QQGKKRKKMS
601: GTGNRSTQKT
101: DRSHGTFALV IVPTRELCLQ VYETLEKLLH RFHWIVPGYV MGGEKKAKEK ARLRKGISIL IATPGRLLDH LKNTASFVHK NLRWVIFDEA DSILELGYGK
201: EIEQIIKLLG SGQNEQGEED DIVPKGIQKQ NLLLSATLND KVNDLAKLSL DDPVMIGLDN TKLQQNLSIE SPAAPDSDAE DMVIHVNKSA NPLSEDYGIP
301: SQLVQRYLRV PCGARLVALL SVLKNLFERE ASQKVVVFFS TRDAVDFHYS LLSEFQWPPN SETEEEGTKE LFLKCKTFRL HGSMEQEDRR SAFGTFKTEK
401: QAVLLSTDVA ARGLDFPKVR CIIQYDCPGE ATEYVHRVGR TARIGEKGEA LLFLQPIEID YLKELKKHGA SLTEYPLMKV LDKFPIPGNM PRIKKVLSLE
501: SHPWVISLQR ALESLTYAEP KMKSLAKNAF VSWVRGYAAH KGELKSIFVV KKLHLGHVAK SFALREQPSL VGKSHHKETM KRKRDERQKG QQGKKRKKMS
601: GTGNRSTQKT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.