Factsheet for Solyc07g042270.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006154	Potato	nucleus	97.49	97.49
PGSC0003DMT400006153	Potato	nucleus	86.93	97.19
KRH12590	Soybean	nucleus	66.33	72.93
VIT_11s0016g00630.t01	Wine grape	nucleus	72.36	72.0
KRH37539	Soybean	nucleus	63.65	70.5
AT2G40700.1	Thale cress	nucleus	64.15	62.79
Bra004584.1-P	Field mustard	nucleus	64.32	62.54
GSMUA_Achr7P18160_001	Banana	nucleus	61.14	62.5
Os05t0110500-02	Rice	nucleus	61.64	62.27
EES18259	Sorghum	nucleus	61.47	61.17
Zm00001d010225_P001	Maize	plasma membrane	51.93	60.31
TraesCS1D01G031400.1	Wheat	nucleus	60.64	59.15
TraesCS1A01G030500.1	Wheat	nucleus	60.3	58.82
TraesCS1B01G037600.1	Wheat	nucleus	59.8	57.95
CDX79974	Canola	nucleus	64.32	55.81
CDY23886	Canola	plasma membrane	64.49	54.92
HORVU1Hr1G004510.5	Barley	plastid	60.47	54.7
Solyc03g114370.2.1	Tomato	nucleus	29.48	31.1
Solyc10g007550.2.1	Tomato	cytosol, nucleus	22.78	30.98
Solyc10g005520.2.1	Tomato	cytosol	22.28	27.25
Solyc02g078880.2.1	Tomato	nucleus	23.12	23.23
Solyc07g064520.2.1	Tomato	nucleus	24.96	19.76
Solyc04g081580.2.1	Tomato	nucleus	24.62	19.76
Solyc10g009070.2.1	Tomato	nucleus	22.28	16.94
Solyc09g090740.2.1	Tomato	nucleus	22.61	16.9
Solyc01g095740.2.1	Tomato	nucleus	24.12	16.55
Solyc12g056340.1.1	Tomato	cytosol, nucleus, plastid	21.78	16.15

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
UniProt:K4CE90	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF13959	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF89	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SMART:SM01178	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc07g042270.2
EnsemblPlants:Solyc07g042270.2.1	UniParc:UPI000276BE0C	:	:	:	:

Description

RNA helicase [Source:UniProtKB/TrEMBL;Acc:K4CE90]

Coordinates

chr7:-:55397795..55404455

Molecular Weight (calculated)

67633.2 Da

IEP (calculated)

10.093

GRAVY (calculated)

-0.330

Length

597 amino acids

Sequence
(BLAST)

001: MELNLNKRKK QKTDNSSTGN SEVFASCTFE SLGLHTTLCD QLKERLGFEA PTLVQAQAIP VILSGRHVLV NAATGTGKTV AYLAPVIHQL QKCDPRIQRS
101: DGTFALVLVP THELCMQVYE ILQKLLHRFH WIVPGYIMGG ESRNKEKARL RKGISILVAT PGRLLDHLKN TSSFLHTNLR WIIFDEADRI LELGYGKEIE
201: DILNILGSKQ QKSVGKGNTT SQISEVQRQN VLLSATLNEK VNHLAEISLD NPVMVGLDKK IELQLTHQDV KPMEFNGNDI LGKDGKLLSS STEEYKLPTQ
301: LLQRYIKVPC GSRLVVLLAI LKHLFEKEPS QKVVVFFSTC DAVDFHYSLV SGFQWLSRQQ SDTDVKQLFL KCNTFRLHGN MNHEDRRTTF HAFKTEKSAL
401: LLSTDVAARG LDFPKVRCII QYDPPGEATE YVHRVGRTAR IGEKGDSLLF LQPVETDYLP GLEKHGVTLT EYPLQKLLDS FPLFGIRYHP KNFVSVDTHP
501: WVVSLQKALE SFTSSELKMK KIAQNAFCSW VRAYTAHRGE LKGIFMVKKL HLGHVARSFA LKEQPSLVNK SLQKQTKKRM RDQKQTNVSK KRKVGKR

Best Arabidopsis Sequence Match ( AT2G40700.1 )
(BLAST)

001: MMKRAQQSAR ETKQEAKDAS KAKSGLFASC SFSSLGLDTK LSDQLKERMG FEAPTLVQAQ AIPVILSGRD VLVNAPTGTG KTIAYLAPLI HHLQGHSPKV
101: DRSHGTFALV IVPTRELCLQ VYETLEKLLH RFHWIVPGYV MGGEKKAKEK ARLRKGISIL IATPGRLLDH LKNTASFVHK NLRWVIFDEA DSILELGYGK
201: EIEQIIKLLG SGQNEQGEED DIVPKGIQKQ NLLLSATLND KVNDLAKLSL DDPVMIGLDN TKLQQNLSIE SPAAPDSDAE DMVIHVNKSA NPLSEDYGIP
301: SQLVQRYLRV PCGARLVALL SVLKNLFERE ASQKVVVFFS TRDAVDFHYS LLSEFQWPPN SETEEEGTKE LFLKCKTFRL HGSMEQEDRR SAFGTFKTEK
401: QAVLLSTDVA ARGLDFPKVR CIIQYDCPGE ATEYVHRVGR TARIGEKGEA LLFLQPIEID YLKELKKHGA SLTEYPLMKV LDKFPIPGNM PRIKKVLSLE
501: SHPWVISLQR ALESLTYAEP KMKSLAKNAF VSWVRGYAAH KGELKSIFVV KKLHLGHVAK SFALREQPSL VGKSHHKETM KRKRDERQKG QQGKKRKKMS
601: GTGNRSTQKT

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT2G40700]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.