Factsheet for Solyc07g064520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057202	Potato	nucleus	97.08	96.95
KRH73730	Soybean	nucleus	65.52	66.22
KRH14417	Soybean	cytosol, nucleus	44.56	63.64
GSMUA_Achr6P00390_001	Banana	cytosol, mitochondrion	61.41	63.08
CDY17287	Canola	nucleus	53.58	61.77
Bra002946.1-P	Field mustard	nucleus	60.21	61.02
AT5G54910.1	Thale cress	nucleus	58.36	59.54
EER99450	Sorghum	nucleus	53.18	53.83
Zm00001d006497_P002	Maize	nucleus	51.86	52.27
TraesCS2A01G222000.1	Wheat	mitochondrion, nucleus	51.33	50.99
TraesCS2D01G228000.1	Wheat	nucleus	51.19	50.52
TraesCS2B01G247500.1	Wheat	nucleus	51.06	50.46
Os07t0517000-01	Rice	nucleus	34.08	49.05
Solyc03g114370.2.1	Tomato	nucleus	25.99	34.63
Solyc10g007550.2.1	Tomato	cytosol, nucleus	18.04	30.98
Solyc10g005520.2.1	Tomato	cytosol	18.3	28.28
Solyc02g078880.2.1	Tomato	nucleus	20.95	26.6
Solyc07g042270.2.1	Tomato	nucleus	19.76	24.96
Solyc10g009070.2.1	Tomato	nucleus	20.56	19.75
Solyc04g081580.2.1	Tomato	nucleus	19.1	19.35
Solyc01g095740.2.1	Tomato	nucleus	20.82	18.05
Solyc12g056340.1.1	Tomato	cytosol, nucleus, plastid	18.57	17.39
Solyc09g090740.2.1	Tomato	nucleus	17.9	16.9

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	UniProt:K4CHD2	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF13959
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF54
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SMART:SM01178	SUPFAM:SSF52540
EnsemblPlantsGene:Solyc07g064520.2	EnsemblPlants:Solyc07g064520.2.1	UniParc:UPI000276C618	SEG:seg	:	:

Description

RNA helicase [Source:UniProtKB/TrEMBL;Acc:K4CHD2]

Coordinates

chr7:-:66625866..66630484

Molecular Weight (calculated)

85286.1 Da

IEP (calculated)

9.280

GRAVY (calculated)

-0.558

Length

754 amino acids

Sequence
(BLAST)

001: MGKHAPKSRK VKIQNRLSEV HEIELLEEWI ESGKPESGSN PLSLEPLPHK APVGRLPDGS FSRYAGCDRF SQLPVSKKTK DGLTQCKYKT MTDIQRASLP
101: HSLCGRDILG AAKTGSGKTL AFVIPVLEKL YKARWGPEDG VGCIIMSPTR ELAGQLFEVL KSVGKHQGFS AGLLIGGRKD VDAEKEHVNG LNILVCTPGR
201: LLQHMDETPN FDCSQLQVLV LDEADRILDV GFKRDLNAII SQLPKHRQTL LFSATQTKSV QDLARLSLKD PEYLGVHEES DTATPNRLQQ TAMLVPLDKK
301: FDMLWSFIKA HLNSRILVFL SSCKQVKFVF ETFKKLRPGI PLKCLHGRMK QDRRMRIYSQ FCEQRSVLFS TDVASRGLDF NKAVDWVVQV DCPEDCASYI
401: HRVGRTARYL SGGRSVLFVM PSEMKMLEKL EEKKIPLRVI KANEKRIQSV SGILASLLVK YPDLQHLAQR AFITYLKSIH KQRDKEIFDV TKLPIDEFSA
501: SLGLPMTPKI RFLKQKLKGK TVSEALSLIP ENTSDDNLLE FPIKDPEFPI KDPDAGKSDI EEVDEDIFLA KETQERGENI NSKGDDMLAT RITKKKKLKI
601: NVHRPVGTRV VFDEEGNTLP PLARLAASSS GADSVQLNKE KVNQRYAELR KNLKMADKED KDLDRKRRKE KRIREKMKNK RGREEEEEED EELSGSDMEI
701: PRGRVDKKTK IYFDSDDEDD KRKGNMAKDG IAADAISLAE QEELALKLLN SMHS

Best Arabidopsis Sequence Match ( AT5G54910.1 )
(BLAST)

001: MVKIKKTKGM RKQIRLNEVE EINLLKQWIE SQKPDSGFNP LSLRPLPKDS KIGKSEDGKN GTVFSRYAGV RKFAQLPISD KTKRGLKDAK YVDMTDVQSA
101: AIPHALCGRD ILGAARTGSG KTLAFVIPIL EKLHRERWSP EDGVGCIIIS PTRELAAQTF GVLNKVGKFH KFSAGLLIGG REGVDVEKER VHEMNILVCA
201: PGRLLQHMDE TPNFECPQLQ ILILDEADRV LDSAFKGQLD PIISQLPKHR QTLLFSATQT KKVKDLARLS LRDPEYISVH AEAVTATPTS LMQTVMIVPV
301: EKKLDMLWSF IKTHLNSRIL VFLSTKKQVK FVHEAFNKLR PGIPLKSLHG KMSQEKRMGV YSQFIERQSV LFCTDVLARG LDFDKAVDWV VQVDCPEDVA
401: SYIHRVGRTA RFYTQGKSLL FLTPSEEKMI EKLQEAKVPI KLIKANNQKL QEVSRLLAAL LVKYPDLQGV AQRAFITYLR SIHKRRDKEI FDVSKLSIEN
501: FSASLGLPMT PRIRFTNLKT KKKGVYESSI AMEIENAQEY EAPLVVKKDL LGEDLEEEDF ALKPRKEGKV VEKSTKEEEV LIPGNRVLKN KKLKINLHRP
601: FGSRVVLDEE GNSLAPLASV AAEAGTEVAL DEERMNDYYK KVGAEMRKAD IEDKKVDKER RREKRMKQKI KRKRGAMEDE EEEEEEDHDG SGSSDDETGR
701: NSKRAKKIVS DNEENGGKIN TDSLSVADLE EMALKFITQ

Arabidopsis Description

RH32DEAD-box ATP-dependent RNA helicase 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFT9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.