CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006497_P002	Maize	nucleus	92.21	91.84
Os07t0517000-01	Rice	nucleus	54.63	77.67
TraesCS2A01G222000.1	Wheat	mitochondrion, nucleus	78.25	76.81
TraesCS2B01G247500.1	Wheat	nucleus	78.39	76.54
TraesCS2D01G228000.1	Wheat	nucleus	78.25	76.31
GSMUA_Achr6P00390_001	Banana	cytosol, mitochondrion	55.17	55.99
KRH73730	Soybean	nucleus	54.09	54.02
PGSC0003DMT400057202	Potato	nucleus	54.23	53.51
Solyc07g064520.2.1	Tomato	nucleus	53.83	53.18
KRH14417	Soybean	cytosol, nucleus	36.64	51.7
CDY17287	Canola	nucleus	44.97	51.22
AT5G54910.1	Thale cress	nucleus	49.4	49.8
Bra002946.1-P	Field mustard	nucleus	49.53	49.6
EER90714	Sorghum	nucleus	24.3	29.05
OQU93356	Sorghum	cytosol	17.32	28.41
OQU76528	Sorghum	nucleus	22.68	28.21
KXG37786	Sorghum	nucleus	17.05	28.04
KXG22990	Sorghum	cytosol	16.64	27.87
EES00264	Sorghum	nucleus, plastid	21.88	25.31
EES03287	Sorghum	cytosol	18.93	25.13
EER99761	Sorghum	cytosol	16.91	25.1
EES18259	Sorghum	nucleus	19.73	24.5
EES01082	Sorghum	mitochondrion, plastid	18.79	23.81
OQU76491	Sorghum	nucleus	19.46	22.1
OQU80427	Sorghum	nucleus	21.21	18.52
KXG35997	Sorghum	nucleus	19.19	18.01
EES07789	Sorghum	mitochondrion	19.19	17.38
OQU81941	Sorghum	nucleus	17.99	15.91

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:8080124	UniProt:C5XA14	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
InterPro:DUF4217	EnsemblPlants:EER99450	ProteinID:EER99450	ProteinID:EER99450.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF13959	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF54	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SMART:SM01178	EnsemblPlantsGene:SORBI_3002G318800	SUPFAM:SSF52540	UniParc:UPI0001A840C2	RefSeq:XP_002462929.1	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:69089580..69093163

Molecular Weight (calculated)

83913.9 Da

IEP (calculated)

9.129

GRAVY (calculated)

-0.548

Length

745 amino acids

Sequence
(BLAST)

001: MRRPKRRAAA KQTRLREVDE ICLLNEWIDA GKPLPRTKPP PLSQSAGPAP AAGEHPEYGA CTLFDELPLS QKTKDGLRKA GFTEMSEIQR AALPHALCGR
101: DVLGAAKTGS GKTLAFVIPV LEKLYRERWG PEDGVGCIIL SPTNDLAGQI FEVITTVGQF HNFSGGAIVG KRKGIELEKE HVNSLNILVC TPGRLVQHLN
201: ETANFDCSQL QLLVLDEADQ ILDHGFRSQV DAIISQIPKV RQTLLFSATQ TKSVKDLARV SLRDPEYISV HEEAKTATPD TLEQYAMIVP LEQKLNMLWS
301: FIKRHLNSKT IVFLSSVKQV KFVYEIFKKL RPGIPLKCMH GRMKYEVQQA IVADFNETTS VLFSTDISSR GLDIENVDWV VQVDCPENID NYIHRVGRTA
401: RYNKKGKSLV FLCPEEEAML EKLKATESKI PIHIRKPKAE QLEQISQNIA SVLVKFPSLQ DLGKRAFVTY LKSIYLQKDK KVFDLSRFSA EQFAAYAASL
501: GLPVTPKIRF ISHKKNVSKK DMEDSDMKQM KSSSKREVII TPKINSDLSV CDGDDDILYP KKPTADTNMD YRLDDVLHPK EPATDTNVTG LERPFKKKKL
601: KINVNRPSGT RVKYDDEGNA IPPLASVAEE ISLEPVVHKD KISQRYAEML REMREHDKED KLEHKKSLRE KKLQKKLKLK RKRQEETEAG SEEDSGSESD
701: RGQDTANKGK KRYFSDGEDN DAAKDGDVLA QQEALALKLL SKMHS

Best Arabidopsis Sequence Match ( AT5G54910.1 )
(BLAST)

001: MVKIKKTKGM RKQIRLNEVE EINLLKQWIE SQKPDSGFNP LSLRPLPKDS KIGKSEDGKN GTVFSRYAGV RKFAQLPISD KTKRGLKDAK YVDMTDVQSA
101: AIPHALCGRD ILGAARTGSG KTLAFVIPIL EKLHRERWSP EDGVGCIIIS PTRELAAQTF GVLNKVGKFH KFSAGLLIGG REGVDVEKER VHEMNILVCA
201: PGRLLQHMDE TPNFECPQLQ ILILDEADRV LDSAFKGQLD PIISQLPKHR QTLLFSATQT KKVKDLARLS LRDPEYISVH AEAVTATPTS LMQTVMIVPV
301: EKKLDMLWSF IKTHLNSRIL VFLSTKKQVK FVHEAFNKLR PGIPLKSLHG KMSQEKRMGV YSQFIERQSV LFCTDVLARG LDFDKAVDWV VQVDCPEDVA
401: SYIHRVGRTA RFYTQGKSLL FLTPSEEKMI EKLQEAKVPI KLIKANNQKL QEVSRLLAAL LVKYPDLQGV AQRAFITYLR SIHKRRDKEI FDVSKLSIEN
501: FSASLGLPMT PRIRFTNLKT KKKGVYESSI AMEIENAQEY EAPLVVKKDL LGEDLEEEDF ALKPRKEGKV VEKSTKEEEV LIPGNRVLKN KKLKINLHRP
601: FGSRVVLDEE GNSLAPLASV AAEAGTEVAL DEERMNDYYK KVGAEMRKAD IEDKKVDKER RREKRMKQKI KRKRGAMEDE EEEEEEDHDG SGSSDDETGR
701: NSKRAKKIVS DNEENGGKIN TDSLSVADLE EMALKFITQ

Arabidopsis Description

RH32DEAD-box ATP-dependent RNA helicase 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFT9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.