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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • plastid 3
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d050315_P001 Maize nucleus 93.79 95.24
Zm00001d032317_P001 Maize nucleus 53.93 94.07
Os08t0416100-01 Rice nucleus 79.72 79.91
TraesCS4D01G337100.1 Wheat nucleus 75.73 75.91
TraesCS5A01G510500.1 Wheat nucleus 75.5 75.59
TraesCS4B01G341100.1 Wheat plastid 75.62 75.53
Solyc10g009070.2.1 Tomato nucleus 60.14 65.35
GSMUA_Achr9P14580_001 Banana nucleus 62.6 65.04
KRH64859 Soybean nucleus 58.15 63.84
KRH09570 Soybean nucleus 57.8 63.45
HORVU4Hr1G083970.6 Barley nucleus 62.37 60.94
Bra003691.1-P Field mustard cytosol 56.74 56.81
CDX79187 Canola cytosol 56.39 56.72
CDX68066 Canola cytosol 56.62 56.69
AT1G77030.1 Thale cress nucleus 56.15 56.69
OQU93356 Sorghum cytosol 16.53 31.06
KXG22990 Sorghum cytosol 16.18 31.01
EER99761 Sorghum cytosol 15.47 26.29
EES18259 Sorghum nucleus 17.0 24.17
KXG37786 Sorghum nucleus 12.43 23.4
EER90714 Sorghum nucleus 17.0 23.27
OQU76528 Sorghum nucleus 16.06 22.87
EES01082 Sorghum mitochondrion, plastid 15.24 22.11
EES00264 Sorghum nucleus, plastid 16.65 22.05
EES03287 Sorghum cytosol 14.19 21.57
EER99450 Sorghum nucleus 18.52 21.21
KXG35997 Sorghum nucleus 19.34 20.78
OQU76491 Sorghum nucleus 15.12 19.66
OQU81941 Sorghum nucleus 18.76 19.0
EES07789 Sorghum mitochondrion 14.42 14.95
Protein Annotations
Gene3D:3.40.50.300MapMan:35.1UniProt:A0A1Z5R9N5InterPro:DBP10_CInterPro:DDX54/DBP10InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003824GO:GO:0004004
GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0016787InterPro:Helicase_ATP-bdInterPro:Helicase_CInterPro:IPR001650InterPro:IPR014001InterPro:IPR014014
EnsemblPlants:OQU80427ProteinID:OQU80427ProteinID:OQU80427.1InterPro:P-loop_NTPasePFAM:PD024971PFAM:PF00270
PFAM:PF00271PFAM:PF08147PFscan:PS51192PFscan:PS51194PFscan:PS51195PANTHER:PTHR24031
PANTHER:PTHR24031:SF292InterPro:RNA_helicase_DEAD_Q_motifSMART:SM00487SMART:SM00490SMART:SM01123EnsemblPlantsGene:SORBI_3007G126500
SUPFAM:SSF52540UniParc:UPI000B42393FSEG:seg:::
Description
hypothetical protein
Coordinates
chr7:-:53953843..53960674
Molecular Weight (calculated)
94938.5 Da
IEP (calculated)
10.500
GRAVY (calculated)
-0.576
Length
853 amino acids
Sequence
(BLAST)
001: MARLTPAKSK PTRKPKSSSS SAMDAAAEPD TMSPRRPKRE KSAGGGSKKS KSGGSKKAKS GGFESMGLCE EVYRGVRHKG YRVPTPIQRK TMPLILAGVD
101: VAAMARTGSG KTAAFLVPML QRLRRRDPSA GVRALILSPT RDLAMQTLKF CIQLGKFTDL RTSIIVGGDS MESQFEDLSE CPDIIIATPG RLMHHLNDVK
201: DMTLRSVEYV VFDEADSLFS MGFAKHLHDI LKKLSDTRQT LLFSATLPSA LADFAKAGLR DPHIVRLDLD KKISPDLRLV FFTLRQEEKL AALLYLVRER
301: ISSEEQTIIF VSTKHHVEFL NILFREEGLE PSLSYGAMDQ EARMIHISKF RARKTMLLIV TDVAARGLDI PLLDNVVNWD FPAKPKLFVH RVGRVARQGR
401: IGTAYTFVTS EDMPYLLDLH LFLSRPLRPA PTEEEILKDM DTINMKIDEA IANGESVYGR FPQTVLDLAS DGLKEVISGC TELIALEKPC ANAFRLYLKT
501: RAMPSKESIK RVKDLPREGL HPIFRDVLRS DELSALAFSE RLKSFRPKQT ILEAEGEAAK ARNSKGSNQW LDVMKKKREV HEGIINLVHQ KSSEDPRPEV
601: EEVDDISNWE KKEVCGKKRK LQSFRDEDYY ISTVPQNQHL EAGLSVRDNE GFVENRFDAA VLDLVDDEAS GMQAQKTRYH WMKNKFVKLN AGDRVTATGK
701: IKTEGGAKIK ASATGIYKRW QQRTHKSINI GGKSGNFAEE GTSSSGGYQR GNKKHFVSHG RRSIPNANVP SEIRNPEQMQ KSRQQKAMEI TRLKNKSAKD
801: GKFQNKFQKN RRPDGNGNGK GRGSGKGAGK GFSKGAGGKG GKGKGKVKGK GGR
Best Arabidopsis Sequence Match ( AT1G77030.1 )
(BLAST)
001: MVEGKGFLVS SVTELHRKEK QKKKGKSGGF ESLNLGPNVF NAIKKKGYKV PTPIQRKTMP LILSGVDVVA MARTGSGKTA AFLIPMLEKL KQHVPQGGVR
101: ALILSPTRDL AEQTLKFTKE LGKFTDLRVS LLVGGDSMED QFEELTKGPD VIIATPGRLM HLLSEVDDMT LRTVEYVVFD EADSLFGMGF AEQLHQILTQ
201: LSENRQTLLF SATLPSALAE FAKAGLREPQ LVRLDVENKI SPDLKLSFLT VRPEEKYSAL LYLVREHISS DQQTLIFVST KHHVEFVNSL FKLENIEPSV
301: CYGDMDQDAR KIHVSRFRAR KTMLLIVTDI AARGIDIPLL DNVINWDFPP RPKIFVHRVG RAARAGRTGC AYSFVTPEDM PYMLDLHLFL SKPVRPAPTE
401: DEVLKNMEEV MTKTSQAIDS GVTVYGRFPQ KTIDLIFNRT REMIDSSAEL DSLERTSTKA FRLYSKTKPS PSKESIRRAK DLPREGLHPI FRSIIETGEL
501: EAMSFFQKIK NFRPKQTILE AEGEVAKSKH VKGPAGQWVD VMKKKRAIHE EIINTRHQQN QKTSNNHLEM EAEPTTSFVD GTVEGSKVSG KKRKAQETFK
601: DDEFFISSIP VNHHSEAGLS LRGNEGFGSN RLDAAVLDLV ADDGQGIKQQ QSNYHWDKKG KKYIKLNNGD RVTASGKIKT ESGAKATAKK TGIYKRWQER
701: SHKKVSRDSG DADETTRMSG RGGRDGKRRQ GSVPNAHVRS EIKDLDQVRK ERQQKANKVS YLQSKRGGRG GRGGARGGRG GGARGGRGGS RDFGGGGRDF
801: GSSSDRGGRS GGRDFGGRRG GASTSSRGGK RGGGRGGGGK RGRGR
Arabidopsis Description
RH29Putative DEAD-box ATP-dependent RNA helicase 29 [Source:UniProtKB/Swiss-Prot;Acc:O49289]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.