Factsheet for Solyc10g009070.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64859	Soybean	nucleus	74.01	74.77
KRH09570	Soybean	nucleus	73.63	74.39
GSMUA_Achr9P14580_001	Banana	nucleus	72.1	68.94
AT1G77030.1	Thale cress	nucleus	69.81	64.85
CDX68066	Canola	cytosol	68.28	62.91
CDX79187	Canola	cytosol	67.9	62.85
Bra003691.1-P	Field mustard	cytosol	68.15	62.79
Zm00001d032317_P001	Maize	nucleus	37.83	60.74
Zm00001d050315_P001	Maize	nucleus	64.97	60.71
OQU80427	Sorghum	nucleus	65.35	60.14
Os08t0416100-01	Rice	nucleus	64.71	59.69
TraesCS5A01G510500.1	Wheat	nucleus	64.46	59.39
TraesCS4B01G341100.1	Wheat	plastid	64.59	59.37
TraesCS4D01G337100.1	Wheat	nucleus	64.2	59.22
HORVU4Hr1G083970.6	Barley	nucleus	52.74	47.42
Solyc10g007550.2.1	Tomato	cytosol, nucleus	18.22	32.57
Solyc10g005520.2.1	Tomato	cytosol	17.83	28.69
Solyc03g114370.2.1	Tomato	nucleus	18.22	25.27
Solyc02g078880.2.1	Tomato	nucleus	17.58	23.23
Solyc04g081580.2.1	Tomato	nucleus	21.91	23.12
Solyc07g042270.2.1	Tomato	nucleus	16.94	22.28
Solyc07g064520.2.1	Tomato	nucleus	19.75	20.56
Solyc09g090740.2.1	Tomato	nucleus	19.36	19.02
Solyc12g056340.1.1	Tomato	cytosol, nucleus, plastid	15.16	14.78
Solyc01g095740.2.1	Tomato	nucleus	16.31	14.71

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DBP10_C	InterPro:DDX54/DBP10	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
UniProt:K4CY83	InterPro:P-loop_NTPase	PFAM:PD024971	PFAM:PF00270	PFAM:PF00271	PFAM:PF08147
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF292	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SMART:SM01123	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc10g009070.2	EnsemblPlants:Solyc10g009070.2.1
UniParc:UPI000276BBAE	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr10:-:3093051..3105113

Molecular Weight (calculated)

87849.0 Da

IEP (calculated)

10.585

GRAVY (calculated)

-0.561

Length

785 amino acids

Sequence
(BLAST)

001: MAILVSSKAE LKRREKQKKK AKSGGFESLG LSSNIFRGIK RKGYRVPTPI QRKTMPLILS GFDVVAMART GSGKTAAFLV PMLEKLKQHV PQAGVRALIL
101: SPTRDLALQT LKFTKELGRF TDIRVSLLVG GDSMESQFEE LAQSPDIIIA TPGRLMHHLS EVDDMSLRTV EYVVFDEADC LFSMGFAEQL HRILTHLGEN
201: RQTLLFSATL PSALAEFAKA GLRDPQLVRL DLDTKISPDL KVAFFTVRQE EKHAALLYLI REQITSDQQT IVFVSTKYHV EFLNILLREE GIEASVCYGD
301: MDHDARKIHV SRFRARKTMV LIVTDVAARG IDIPLLDNVI NFDFPTKPKL FVHRVGRAAR AGRIGTAYSL VTSDDMAYLL DLHLFLSKPI RAAPTEEEVL
401: QDVDGVLSKI DQAVANGETV YGRFPQTVLD LLSDRVREII DHSTELETLQ RPCTKAFGLY SKTKSKPSKE SIKRVKDLPR EGLHPMFKND LRGNELSAMA
501: FSERLKAFRP KQTILEAEGE AAKSKKQNQW VDVMKMKRAI HEEVINKVRQ QRSSVPASKE DDFDPTPSKR KDKQVSGSKR KAKIFKDEEY FISAVPTNQH
601: FEAGLSVRGN HGFESKRLDA AVLDLVADDK NGLQKQKVSY HWDKRSKKYI KLNNGDRVTA SGKIKTESGS KAKTNKTGIY KKWKDQSHKR ISLNGTNDGN
701: SAAQSTSLAG GPRGQGGGRN FRGGRNNRSV PNAHVRSEIK DVDQVRKERE KKAQRASYLK TKKGKKSYKG GKKGNGKGKG KGRHG

Best Arabidopsis Sequence Match ( AT1G77030.1 )
(BLAST)

001: MVEGKGFLVS SVTELHRKEK QKKKGKSGGF ESLNLGPNVF NAIKKKGYKV PTPIQRKTMP LILSGVDVVA MARTGSGKTA AFLIPMLEKL KQHVPQGGVR
101: ALILSPTRDL AEQTLKFTKE LGKFTDLRVS LLVGGDSMED QFEELTKGPD VIIATPGRLM HLLSEVDDMT LRTVEYVVFD EADSLFGMGF AEQLHQILTQ
201: LSENRQTLLF SATLPSALAE FAKAGLREPQ LVRLDVENKI SPDLKLSFLT VRPEEKYSAL LYLVREHISS DQQTLIFVST KHHVEFVNSL FKLENIEPSV
301: CYGDMDQDAR KIHVSRFRAR KTMLLIVTDI AARGIDIPLL DNVINWDFPP RPKIFVHRVG RAARAGRTGC AYSFVTPEDM PYMLDLHLFL SKPVRPAPTE
401: DEVLKNMEEV MTKTSQAIDS GVTVYGRFPQ KTIDLIFNRT REMIDSSAEL DSLERTSTKA FRLYSKTKPS PSKESIRRAK DLPREGLHPI FRSIIETGEL
501: EAMSFFQKIK NFRPKQTILE AEGEVAKSKH VKGPAGQWVD VMKKKRAIHE EIINTRHQQN QKTSNNHLEM EAEPTTSFVD GTVEGSKVSG KKRKAQETFK
601: DDEFFISSIP VNHHSEAGLS LRGNEGFGSN RLDAAVLDLV ADDGQGIKQQ QSNYHWDKKG KKYIKLNNGD RVTASGKIKT ESGAKATAKK TGIYKRWQER
701: SHKKVSRDSG DADETTRMSG RGGRDGKRRQ GSVPNAHVRS EIKDLDQVRK ERQQKANKVS YLQSKRGGRG GRGGARGGRG GGARGGRGGS RDFGGGGRDF
801: GSSSDRGGRS GGRDFGGRRG GASTSSRGGK RGGGRGGGGK RGRGR

Arabidopsis Description

RH29Putative DEAD-box ATP-dependent RNA helicase 29 [Source:UniProtKB/Swiss-Prot;Acc:O49289]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.