Factsheet for Solyc02g078880.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057606	Potato	nucleus	98.48	93.9
VIT_13s0067g01900.t01	Wine grape	nucleus	78.28	78.15
KRG97683	Soybean	nucleus	77.1	77.76
AT5G05450.1	Thale cress	nucleus	69.36	69.48
Bra028757.1-P	Field mustard	nucleus	68.69	68.69
CDY04952	Canola	nucleus	68.69	68.69
CDY14112	Canola	cytosol	68.69	68.69
Bra009114.1-P	Field mustard	nucleus	68.18	68.07
KRH31184	Soybean	nucleus	76.09	67.97
CDX70149	Canola	nucleus	68.35	67.89
GSMUA_Achr8P01870_001	Banana	cytosol	70.37	64.21
AT1G71370.1	Thale cress	nucleus	58.59	62.37
Zm00001d024719_P001	Maize	nucleus	35.35	62.13
Zm00001d027279_P001	Maize	nucleus	29.63	61.75
AT1G71280.1	Thale cress	nucleus	48.32	61.72
CDX96202	Canola	cytosol	28.79	61.51
Os01t0164500-01	Rice	plastid	63.3	58.11
EES00264	Sorghum	nucleus, plastid	62.96	58.07
TraesCS3B01G116900.1	Wheat	plastid	61.95	57.23
TraesCS3A01G100100.1	Wheat	plastid	61.78	56.99
TraesCS3D01G100800.1	Wheat	plastid	61.62	56.92
HORVU3Hr1G018130.7	Barley	plastid	62.12	54.51
Zm00001d041799_P001	Maize	cytosol	23.74	53.41
Zm00001d039746_P001	Maize	nucleus	62.63	51.31
Zm00001d002007_P002	Maize	cytosol, mitochondrion, plastid	27.1	44.48
Solyc10g007550.2.1	Tomato	cytosol, nucleus	22.9	30.98
Solyc10g005520.2.1	Tomato	cytosol	22.9	27.87
Solyc03g114370.2.1	Tomato	nucleus	25.59	26.86
Solyc07g042270.2.1	Tomato	nucleus	23.23	23.12
Solyc07g064520.2.1	Tomato	nucleus	26.6	20.95
Solyc04g081580.2.1	Tomato	nucleus	26.09	20.83
Solyc10g009070.2.1	Tomato	nucleus	23.23	17.58
Solyc12g056340.1.1	Tomato	cytosol, nucleus, plastid	23.23	17.14
Solyc09g090740.2.1	Tomato	nucleus	22.22	16.52
Solyc01g095740.2.1	Tomato	nucleus	23.06	15.75

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	UniProt:K4B9B2	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF13959
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF2
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SMART:SM01178	SUPFAM:SSF52540
EnsemblPlantsGene:Solyc02g078880.2	EnsemblPlants:Solyc02g078880.2.1	UniParc:UPI00027684AA	SEG:seg	:	:

Description

RNA helicase [Source:UniProtKB/TrEMBL;Acc:K4B9B2]

Coordinates

chr2:-:43519839..43525716

Molecular Weight (calculated)

66308.4 Da

IEP (calculated)

9.305

GRAVY (calculated)

-0.276

Length

594 amino acids

Sequence
(BLAST)

001: MASANQNKAL TNTRFSDLEP RLAEPVLEAL TNSGFEFCTP VQAATIPLLC SYKDVTVDAA TGSGKTLAFV LPVVEIIRRS SSNPKPHKVM GIIISPTREL
101: SSQIFHVAQP FISTLANVRP MLLVGGLEVK ADIKKIEEEG ANLLIGTPGR LYDIMERLDI LDFRDLEILI LDEADRLLGM GFEKQLNSII SRLPKLRRTG
201: LFSATQTEAV EELSKAGLRN PVRVEVRAEA KQLSGSASGN STSSKTPSGL HIEYLECEAD KKSSQLVHLI TKNKSKKIIV YFMTCACVDY WGTVLPRLSC
301: LKSFSLISLH GRMKQSAREK ALASFTSLSS GVLLCTDVAA RGLDIAGVDY IIQYDLPQDD KMFIHRVGRT ARLGRQGSAV VFLLPKEEAY VEFLRIKDVF
401: LEEGECASDA PDIIDEIRSA AKKDRDVMEK GLRAFVSYIR AYKEHHCSYI LRWKELEIGK LGMGYGLLQL PSVPDVKHHS LSTKGFTAVE DINLDNIKFK
501: DKSREKQRKK NLQVKKAAMA QQQEQKTQRL KKEANSTASA LRKRTAKQRR ATQLVEDEDE ITREYRLLKK LKKGAIDENE FAKLTGTEDL LSDI

Best Arabidopsis Sequence Match ( AT5G05450.1 )
(BLAST)

001: MDSSANINKA LTETRFSDLE PPLSGDIIEA LNQSDFEFCT PVQAATIPLL CSYKDVAVDA ATGSGKTLAF VVPLVEILRR STSFPPKPHQ VMGVIISPTR
101: ELSTQIYNVA QPFVSTLANV NSVLLVGGRE VKADMKIIEE EGCNVLIGTP GRLSDIMERM EILDFRNLEI LILDEADRLL EMGFQRQVNY IISRLPKQRR
201: TGLFSATQTE GVEELAKAGL RNPVRVEVRA KSKSESSQQL TNSKTPSGLH LEYMECEADK KSSQLVDLLI KNSDKKLIVF FMTCASVDYW GLVLSKIPAL
301: KSISLIPIHG DMKQNARDKA LASFTKASSG ALLCTDVAAR GLDIPGIDYV VQYDPPQDPN MFNHRAGRTA RLGRQGRAIV FLLPKEEAYV EFMRIRRVPL
401: EERKCSEDAS DVIPIIRSAA MKDRAVMEKG LKAFVSFVRA YKEHHCSFIF RWKDLEIGKL AMGYGLLYLP SMSEVKQHRL SSEGFTPVEG VKFEEIKFKD
501: KYREKQRQQN LQVRKEKRQE EKKEKGKRKR VDASASNDPK KASRKLTGKQ RQTIQTAEDE EVMDRDYKLM IKVKKGLIKE DEYERLTGDD DLF

Arabidopsis Description

RH18DEAD-box ATP-dependent RNA helicase 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLB0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.