CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009114.1-P	Field mustard	nucleus	98.33	98.82
CDY14112	Canola	cytosol	89.13	89.73
CDY04952	Canola	nucleus	89.13	89.73
AT5G05450.1	Thale cress	nucleus	82.94	83.64
CDX96202	Canola	cytosol	33.95	73.02
VIT_13s0067g01900.t01	Wine grape	nucleus	70.23	70.59
KRG97683	Soybean	nucleus	68.56	69.61
Solyc02g078880.2.1	Tomato	nucleus	67.89	68.35
PGSC0003DMT400057606	Potato	nucleus	67.56	64.85
KRH31184	Soybean	nucleus	67.39	60.6
GSMUA_Achr8P01870_001	Banana	cytosol	62.37	57.3
CDY42845	Canola	cytosol	22.58	30.07
CDY47007	Canola	cytosol	22.41	29.84
CDX99342	Canola	nucleus	26.59	27.99
CDX92251	Canola	nucleus	26.59	27.94
CDX82336	Canola	nucleus	26.59	27.75
CDX95512	Canola	nucleus	26.42	27.72
CDY18530	Canola	nucleus	26.25	27.64
CDX75974	Canola	nucleus	26.59	27.32
CDY40740	Canola	cytosol	24.08	26.62
CDY36514	Canola	nucleus	25.25	25.9
CDY08740	Canola	nucleus	25.25	25.42
CDY52844	Canola	cytosol	20.4	25.05
CDX81759	Canola	cytosol	20.23	24.8
CDY44780	Canola	mitochondrion	23.58	24.39
CDY17287	Canola	nucleus	23.91	21.87
CDY41525	Canola	mitochondrion	23.91	20.11
CDX79974	Canola	nucleus	23.08	20.06
CDX84428	Canola	mitochondrion	23.58	19.94
CDY23886	Canola	plasma membrane	23.08	19.69
CDY40519	Canola	nucleus	23.24	18.34
CDX69933	Canola	cytosol	4.01	17.65
CDY53643	Canola	nucleus	23.75	16.82
CDY50846	Canola	nucleus	23.58	16.81
CDY52719	Canola	nucleus, plastid	22.24	16.04
CDX79187	Canola	cytosol	22.74	16.04
CDX68066	Canola	cytosol	22.74	15.96
CDY34979	Canola	nucleus, plastid	22.07	15.87
CDY49890	Canola	mitochondrion	20.57	15.77
CDY45370	Canola	mitochondrion	20.57	15.73
CDY32273	Canola	nucleus	22.24	14.57
CDY21554	Canola	mitochondrion	24.08	10.6
CDX69935	Canola	mitochondrion	23.91	10.37

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078C1Q2	EnsemblPlants:CDX70149	ProteinID:CDX70149	ProteinID:CDX70149.1
ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00136261001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF13959
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF2
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SMART:SM01178	SUPFAM:SSF52540
UniParc:UPI0004EEF9ED	SEG:seg	:	:	:	:

Description

BnaA10g24980D

Coordinates

chrLK031790:-:3325229..3328087

Molecular Weight (calculated)

67000.1 Da

IEP (calculated)

9.473

GRAVY (calculated)

-0.420

Length

598 amino acids

Sequence
(BLAST)

001: MDPSPNTNEA LTETRFSDLK PPLSGDIIEA LLRSGPPGFE FCTPVQAATI PLLCSHKDVA VDAATGSGKT LAFVLPLVEI LRRSTSYPPK PHQVMGVIIS
101: PTRELSTQIY NVAQPFVSTL PNVNSVLLVG GRDVRADMKI IEEEGCNLLI GTPGRLSDIM ERMDILDFRN LEILILDEAD RLLEMGFQNQ VNSIISRLPK
201: QRRTGLFSAT QTEGVEELAK AGLRNPVRVE VRAESKSASS NQLTNSKIPS GLHLEYLVCE ADKKSSQLVD LLVRNKNKKL IVYFMTCACV DYWGLVLSKI
301: PALKSISLIP IHGDKKQNAR DKALASFTKA SSGVLLCTDV AARGLDIPGI DYVVQYDPPQ DPKMFNHRVG RTARLGKEGR SIVFLLPEEE DYVEFMRRRG
401: VFCQEKKCSK EASDVIPIIR SLAMKDRAVY EKGKRAFVSF VHGYKEHECS YILRWQSLEI GKLAMGYGLL HVPSMSEVKQ KRLSSEGFSP VEGVLKFEDI
501: KFKDKSKEKQ RKQNLQAKKE KLEEKKRERD KKNSKKAVNA SSATTDSKKR KLTGKQRQTI QTAEDEEEMA RDYRLLKKLK KGSIEEDDFA KLTGADDF

Best Arabidopsis Sequence Match ( AT5G05450.1 )
(BLAST)

001: MDSSANINKA LTETRFSDLE PPLSGDIIEA LNQSDFEFCT PVQAATIPLL CSYKDVAVDA ATGSGKTLAF VVPLVEILRR STSFPPKPHQ VMGVIISPTR
101: ELSTQIYNVA QPFVSTLANV NSVLLVGGRE VKADMKIIEE EGCNVLIGTP GRLSDIMERM EILDFRNLEI LILDEADRLL EMGFQRQVNY IISRLPKQRR
201: TGLFSATQTE GVEELAKAGL RNPVRVEVRA KSKSESSQQL TNSKTPSGLH LEYMECEADK KSSQLVDLLI KNSDKKLIVF FMTCASVDYW GLVLSKIPAL
301: KSISLIPIHG DMKQNARDKA LASFTKASSG ALLCTDVAAR GLDIPGIDYV VQYDPPQDPN MFNHRAGRTA RLGRQGRAIV FLLPKEEAYV EFMRIRRVPL
401: EERKCSEDAS DVIPIIRSAA MKDRAVMEKG LKAFVSFVRA YKEHHCSFIF RWKDLEIGKL AMGYGLLYLP SMSEVKQHRL SSEGFTPVEG VKFEEIKFKD
501: KYREKQRQQN LQVRKEKRQE EKKEKGKRKR VDASASNDPK KASRKLTGKQ RQTIQTAEDE EVMDRDYKLM IKVKKGLIKE DEYERLTGDD DLF

Arabidopsis Description

RH18DEAD-box ATP-dependent RNA helicase 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLB0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.