CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028652.1-P	Field mustard	nucleus	97.6	97.6
CDY44780	Canola	mitochondrion	95.19	89.1
AT5G08620.1	Thale cress	nucleus	80.78	77.62
CDX69933	Canola	cytosol	19.22	76.47
Os01t0618500-01	Rice	nucleus	58.78	59.33
HORVU3Hr1G054730.1	Barley	cytosol, mitochondrion, nucleus, plastid	58.23	58.55
TraesCS3D01G230300.1	Wheat	nucleus	58.04	58.36
TraesCS3A01G222500.1	Wheat	nucleus, plastid	58.04	58.36
TraesCS3B01G252700.2	Wheat	nucleus	51.02	57.86
EES03287	Sorghum	cytosol	58.23	56.15
Zm00001d044203_P001	Maize	plasma membrane	57.12	55.18
EES01082	Sorghum	mitochondrion, plastid	59.33	54.59
Zm00001d044208_P001	Maize	plastid	58.96	54.44
Os01t0618400-01	Rice	nucleus, plasma membrane	59.52	54.21
TraesCS3B01G252600.1	Wheat	plastid	57.49	53.16
TraesCS3D01G230400.2	Wheat	mitochondrion	57.67	53.06
CDX84428	Canola	mitochondrion	69.32	53.04
TraesCS3A01G222700.1	Wheat	mitochondrion	57.49	52.89
CDY41525	Canola	mitochondrion	69.5	52.88
KRH47920	Soybean	nucleus	65.99	50.78
OQU76491	Sorghum	nucleus	61.0	50.3
VIT_15s0046g01010.t01	Wine grape	plastid	67.84	47.72
GSMUA_Achr8P04210_001	Banana	cytosol	62.48	45.68
KRH06491	Soybean	nucleus	65.8	44.17
GSMUA_Achr10P...	Banana	mitochondrion	61.55	43.99
Solyc01g095740.2.1	Tomato	nucleus	65.99	41.03
PGSC0003DMT400000611	Potato	mitochondrion	65.62	40.76
Zm00001d046097_P001	Maize	mitochondrion	61.55	35.58
TraesCS7D01G328100.1	Wheat	mitochondrion	61.18	34.52
Os06t0526600-01	Rice	mitochondrion	58.6	34.34
TraesCS7A01G350700.1	Wheat	mitochondrion	61.0	34.09
TraesCS7B01G232200.1	Wheat	mitochondrion	60.81	33.95
CDY45370	Canola	mitochondrion	48.43	33.5
CDY49890	Canola	mitochondrion	48.06	33.33
CDY21554	Canola	mitochondrion	78.0	31.05
CDX69935	Canola	mitochondrion	78.37	30.75
CDY42845	Canola	cytosol	23.66	28.51
CDY47007	Canola	cytosol	23.66	28.51
CDX92251	Canola	nucleus	27.54	26.19
CDX82336	Canola	nucleus	27.73	26.18
CDX95512	Canola	nucleus	27.54	26.14
CDY18530	Canola	nucleus	27.36	26.06
CDX99342	Canola	nucleus	27.36	26.06
CDX75974	Canola	nucleus	27.54	25.6
CDY36514	Canola	nucleus	27.54	25.56
CDX96202	Canola	cytosol	12.94	25.18
CDY08740	Canola	nucleus	27.54	25.08
CDX81759	Canola	cytosol	22.18	24.59
CDY52844	Canola	cytosol	21.81	24.23
CDX70149	Canola	nucleus	26.62	24.08
CDY14112	Canola	cytosol	26.06	23.74
CDY04952	Canola	nucleus	25.88	23.57
CDX79974	Canola	nucleus	25.14	19.77
CDY17287	Canola	nucleus	23.66	19.57
CDY23886	Canola	plasma membrane	25.14	19.4
CDY40519	Canola	nucleus	24.58	17.55
CDY50846	Canola	nucleus	25.32	16.33
CDY53643	Canola	nucleus	25.32	16.23
CDY52719	Canola	nucleus, plastid	23.84	15.56
CDY34979	Canola	nucleus, plastid	23.84	15.5
CDX79187	Canola	cytosol	22.0	14.03
CDX68066	Canola	cytosol	22.0	13.97
CDY32273	Canola	nucleus	21.81	12.92

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078HQ75	UniProt:A0A078HQ75	EnsemblPlants:CDY40740	ProteinID:CDY40740
ProteinID:CDY40740.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00071636001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF528	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI0004EE8E7A	SEG:seg	:	:	:

Description

BnaAnng06030DBnaAnng06030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HQ75]

Coordinates

chrLK032478:-:81764..84628

Molecular Weight (calculated)

60273.3 Da

IEP (calculated)

10.256

GRAVY (calculated)

-0.341

Length

541 amino acids

Sequence
(BLAST)

001: MNSDGSNSGR KRRKNADDSG NNRASKRGRE DKLAVDDSVP PVKKTASTKA TETTRIEHIE TSDSYLSNTR FDQFPLSPLS LKALECAGFK TMTVVQEATL
101: PIILKGKDVL AKAKTGTGKT VAYLLPSIEA VIKSPPPAST DKKKPSIIVL VVCPTRELAC QAAAEAKTLL KYHSSIGVDV VIGGKKLRAE QRRMQKHPCR
201: ILVATPGRLI DHIDNTPGFA RRLRGVKVLV LDEADHLLDM GFRRDVERII SAVPKKRQTF LFSATVPEEV RQICHVALKQ DHEFVNCVQE GSDETHQKVT
301: QMYMVASLDR HFSLIYMLLK RHIAENVDYK VIIFCTTAMV TRMVADLLGK LSLNVREIHS RKPQGYRTRV SDEFRKSKSI ILVTSDVSSR GLDYPDVSLV
401: VQMGLPSDRK QYLHRLGRTG REDKEGEGVL LLAPWEEYFL SSVKDLPITK ASLPQTDPEA VKKVKKALRQ VDMKYKEAAY QAWLGYYTSQ KKIARGTTRL
501: VELANEFSRS MGLSIPPAIP VNVIDKMGLK NVPGLRVAPG S

Best Arabidopsis Sequence Match ( AT5G08620.1 )
(BLAST)

001: MNSDGPKSGK KRREIRAKLV KKLTSDEDGS GKLVKDNNKS LKRGREGKSD VDEPLIKKPA STTPLVTQIA KTSDSYLSKT RFDQFPLSPL TLKGIEDAGF
101: KTMTVVQEAT LPLILQGKDI LAKAKTGTGK TVAFLLPSIE AVIKAPPASR DNRHPPIIVL VVCPTRELAC QAAAEANILL KYHPSIGVQV VIGGTKLPTE
201: QRRLQKSPCQ ILVATPGRLK DHIDNTSGFA TRLMGVKVLV LDEADHLLDM GFRREIERII AAVPKQRQTF LFSATVSDEV RQICHVALKR DHEFVNCVQE
301: GAGETHQKVS QMYMIASLDR HFSLLYGLLK KHITDNVGYK VIIFCTTAMV TRLVADLLGK LSLNVREIHS RKPQSYRTRV SDEFRKSKSI ILVTSDVSAR
401: GVDYPDVSLV VQMGLPSDRE QYIHRLGRTG RKGKEGEGVL LLAPWEEYFL SSVKDLPITK SSLPPIDHEA VKKVQKGLIQ VEMTNKEAAY QAWLGYYKSQ
501: KKIARDTTRL VELANEFSRS MGLSIPPAIP VNILGKMGLK NVPGIRVAPG FDKKPAKRNY RSR

Arabidopsis Description

RH25DEAD-box ATP-dependent RNA helicase 25 [Source:UniProtKB/Swiss-Prot;Acc:Q94C75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.