Factsheet for Os01t0618500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 19621931
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G252700.2	Wheat	nucleus	70.9	79.66
TraesCS3A01G222500.1	Wheat	nucleus, plastid	78.54	78.25
TraesCS3D01G230300.1	Wheat	nucleus	78.36	78.07
HORVU3Hr1G054730.1	Barley	cytosol, mitochondrion, nucleus, plastid	78.36	78.07
EES03287	Sorghum	cytosol	80.97	77.36
Zm00001d044203_P001	Maize	plasma membrane	76.87	73.57
Os01t0618400-01	Rice	nucleus, plasma membrane	80.41	72.56
Bra009356.1-P	Field mustard	cytosol	61.94	59.18
Bra028652.1-P	Field mustard	nucleus	59.7	59.15
CDY40740	Canola	cytosol	59.33	58.78
AT5G08620.1	Thale cress	nucleus	61.01	58.08
CDY44780	Canola	mitochondrion	60.45	56.06
GSMUA_Achr8P04210_001	Banana	cytosol	72.01	52.16
KRH47920	Soybean	nucleus	67.35	51.35
CDX84428	Canola	mitochondrion	64.55	48.94
AT5G63630.2	Thale cress	mitochondrion, plastid	65.3	48.88
CDY41525	Canola	mitochondrion	64.74	48.8
VIT_15s0046g01010.t01	Wine grape	plastid	67.91	47.33
Bra038650.1-P	Field mustard	mitochondrion	64.74	46.7
Bra009355.1-P	Field mustard	mitochondrion, plastid	64.74	45.54
KRH06491	Soybean	nucleus	67.35	44.79
AT5G08610.1	Thale cress	mitochondrion, plastid	66.42	41.88
Solyc01g095740.2.1	Tomato	nucleus	66.23	40.8
PGSC0003DMT400000611	Potato	mitochondrion	65.3	40.18
Os06t0526600-01	Rice	mitochondrion	61.75	35.86
Os02t0826100-01	Rice	cytosol	52.05	34.4
Os07t0660000-00	Rice	cytosol	23.69	28.54
Os07t0633500-00	Rice	nucleus	20.71	27.54
Os06t0535100-00	Rice	nucleus	29.66	27.32
Os03t0802700-01	Rice	nucleus	29.48	26.78
Os03t0669000-01	Rice	cytosol, nucleus, plastid	23.32	26.48
CDY21554	Canola	mitochondrion	64.37	25.39
CDX69935	Canola	mitochondrion	64.37	25.02
Os05t0110500-02	Rice	nucleus	26.31	23.86
Os01t0164500-01	Rice	plastid	27.05	22.41
Os12t0481100-01	Rice	nucleus	25.0	16.71
Os04t0510400-01	Rice	nucleus	25.37	16.35
Os07t0517000-01	Rice	nucleus	14.18	14.5
Os08t0416100-01	Rice	nucleus	22.95	14.45

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:4326615	EMBL:AK067476	ProteinID:BAD61516.1	ProteinID:BAF05505.1
ProteinID:BAS73191.1	InterPro:DEAD/DEAH_box_helicase_dom	ProteinID:EEE54998.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EnsemblPlantsGene:Os01g0618500
EnsemblPlants:Os01t0618500-01	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF275	UniProt:Q0JL73	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0000DD8C03	RefSeq:XP_015621603.1
SEG:seg	:	:	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 26, RNA helicase 26Similar to RNA helicase (Fragment). (Os01t0618500-01)

Coordinates

chr1:+:24602227..24605484

Molecular Weight (calculated)

58852.6 Da

IEP (calculated)

9.974

GRAVY (calculated)

-0.215

Length

536 amino acids

Sequence
(BLAST)

001: MMSGGPSDAT HRKRRRRRGP KGSGVDGPSI PRAVTTNGAG PEEEEVVEGK AMELDAGMSA AEVGGVVGSH LSETRFDQCP VSPLSLKAIK DAGYEKMTQV
101: QEATLPIILQ GEDVLAKAKT GTGKTVAFLL PAIELLSTLP RSPSINLLVI CPTRELANQV AAEARKLLKY HRSLGVQVVI GGTKLPQEQR SMQSNPCQIL
201: VATPGRLKDH LENTPGFSNR IKGVKVLVLD EADRLLDMGF RRDIEKIIAF IPKERQTLLF SATVPEEVRQ ISHIAMKRGY KFINTVKEGD EETHSQVSQM
301: YMVAPLDLHF SILYNVLKKH IAEDADYKVI VFCTTAMVTK LVAEVLSQLK LNIREIHSRK SQSARTKVSD EFRKSKGLIL VSSDVSARGV DYPDVTLVIQ
401: VGLPADREQY IHRLGRTGRK GKDGLGLLLL APWETYFLNS VQDLSVSQAV VPTIDSSIQT GVKDALGRVE TKSKESAYQA WLGYYNSNKA ISRDKSRLVR
501: LAEEFSQSMG LAIPPAIPKL ILRKMGLNNV PGLRSV

Best Arabidopsis Sequence Match ( AT5G08610.1 )
(BLAST)

001: MSSKFPLGVR FITHSLPCTR LASMNSGALI YSFRSVPVLS KAFPFRLKYI GLGSRVNFST RPERSQPEFA RRSGAGGEIR ASKSLIEDEA ELSDWVSDLR
101: TSSLRGKFTS DEDNADPEVV RRNVDRDTSR GPRRGREGQS DRFGGAKRGK EGEMDRFGSP NRRRTSGEPA DSFGNKRLGD REGSRNGRVQ GKSSESSFRG
201: RSDRNVDSGS SFRGRSDKNV DSGSSFRGRN DRNVDSGSSF RGRSDRNVDS GSSFRGRSDR NVDSGSSFRG RNDRNVDSGS SFRGRNDRNV ESGFRREPGS
301: ENNRGLGKQT RGLSLEEEDS SDDDENRVGL GNIDDLPSED SSDEDDENDE PLIKKAASAK AVQTDKPTGE HVKTSDSYLS KTRFDQFPLS PLSLKAIKDA
401: GFETMTVVQE ATLPIILQGK DVLAKAKTGT GKTVAFLLPA IEAVIKSPPA SRDSRQPPII VLVVCPTREL ASQAAAEANT LLKYHPSIGV QVVIGGTKLP
501: TEQRRMQTNP CQILVATPGR LKDHIENTSG FATRLMGVKV LVLDEADHLL DMGFRRDIER IIAAVPKQRQ TFLFSATVPE EVRQICHVAL KRDHEFINCV
601: QEGSGETHQK VTQMYMIASL DRHFSLLHVL LKEHIADNVD YKVIIFCTTA MVTRLVADLL SQLSLNVREI HSRKPQSYRT RVSDEFRKSK AIILVTSDVS
701: ARGVDYPDVS LVVQMGLPSD REQYIHRLGR TGRKGKEGEG VLLLAPWEEY FMSSVKDLPI TKSPLPPIDP EAVKRVQKGL SQVEMKNKEA AYQAWLGYYK
801: SQKMIARDTT RLVELANEFS RSMGLDSPPA IPKNVLGKMG LKNVPGLRTK

Arabidopsis Description

RH26PDE340 [Source:UniProtKB/TrEMBL;Acc:A0A178UFQ6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.