Factsheet for HORVU3Hr1G054730.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G252700.2	Wheat	nucleus	84.39	95.18
TraesCS3D01G230300.1	Wheat	nucleus	94.98	94.98
TraesCS3A01G222500.1	Wheat	nucleus, plastid	94.61	94.61
Os01t0618500-01	Rice	nucleus	78.07	78.36
EES03287	Sorghum	cytosol	80.67	77.36
Zm00001d044203_P001	Maize	plasma membrane	77.88	74.82
Bra009356.1-P	Field mustard	cytosol	61.15	58.65
Bra028652.1-P	Field mustard	nucleus	58.74	58.41
CDY40740	Canola	cytosol	58.55	58.23
AT5G08620.1	Thale cress	nucleus	60.59	57.9
CDY44780	Canola	mitochondrion	59.11	55.02
KRH47920	Soybean	nucleus	64.5	49.36
GSMUA_Achr8P04210_001	Banana	cytosol	67.66	49.19
AT5G63630.2	Thale cress	mitochondrion, plastid	62.64	47.07
CDX84428	Canola	mitochondrion	61.71	46.96
CDY41525	Canola	mitochondrion	61.9	46.84
VIT_15s0046g01010.t01	Wine grape	plastid	65.24	45.64
Bra038650.1-P	Field mustard	mitochondrion	61.9	44.82
Bra009355.1-P	Field mustard	mitochondrion, plastid	63.38	44.75
KRH06491	Soybean	nucleus	64.5	43.05
AT5G08610.1	Thale cress	mitochondrion, plastid	63.75	40.35
Solyc01g095740.2.1	Tomato	nucleus	62.83	38.85
PGSC0003DMT400000611	Potato	mitochondrion	62.45	38.58
HORVU6Hr1G093300.7	Barley	cytosol, nucleus	49.07	34.74
HORVU4Hr1G000640.1	Barley	cytosol, nucleus	26.39	28.57
HORVU5Hr1G010160.3	Barley	cytosol	28.25	25.25
CDY21554	Canola	mitochondrion	63.01	24.94
CDX69935	Canola	mitochondrion	63.01	24.58
HORVU2Hr1G022490.2	Barley	nucleus	22.12	24.14
HORVU6Hr1G020570.1	Barley	plastid	23.23	22.08
HORVU1Hr1G004510.5	Barley	plastid	26.58	21.67
HORVU3Hr1G018130.7	Barley	plastid	26.77	21.27
HORVU2Hr1G028120.2	Barley	plastid	16.36	17.71
HORVU5Hr1G093160.3	Barley	nucleus	25.84	16.73
HORVU2Hr1G088480.2	Barley	nucleus, plastid	25.46	15.78
HORVU4Hr1G083970.6	Barley	nucleus	15.24	9.39

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	EnsemblPlantsGene:HORVU3Hr1G054730
EnsemblPlants:HORVU3Hr1G054730.1	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
UniProt:M0X102	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF275	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000296A782	SEG:seg	:

Description

No Description!

Coordinates

chrchr3H:-:407815365..407818568

Molecular Weight (calculated)

59520.3 Da

IEP (calculated)

10.123

GRAVY (calculated)

-0.216

Length

538 amino acids

Sequence
(BLAST)

001: MSGNRGYAAA PKRQRRRRPR DAEDGSAFPR AVASRPRGAD QVREVAVVPA EAMDIDAGTS TNAATGGVDG SYLSDTRFDQ CAVSPLSLQG IKDAGYERLT
101: RVQEATLPVI LQGKDVLAKA KTGTGKTVAF LLPAIELLST LPHSTSINLL VMLPTRELAN QVAVEARKLL KYHNSLDVQV VIGGTRLPQE QRSMRSKPCQ
201: ILVATPGRLI DHLENTPGFS TRIKGVKVLV LDEADRLLDM GFRRDIEKII AFIPKERQTL LFSATVPAEV REISHLAMQK DYKFINTVQE GDEETHAQVN
301: QMYMVAPLDL HFSILYGVLK KHVAEDVEYK VIIFCTTAMV TKLVAEILSQ LKLNIREIHS RKSQSARTKV SDEFRKSKSL ILVSSDVSAR GVDYPDVSLV
401: IQVGLPSDRQ QYIHRLGRTG RKGKEGQGIL LLAPWEKHFL SSVNDLSITE TVAPPVNPSI HAEVKGAIKR VEMKTKESAY QAWLGYYNSN KTISRDKSRL
501: VKLAEEFSQS MGLEIVPAIP KLILRKMGLI NVPGLRSS

Best Arabidopsis Sequence Match ( AT5G08610.1 )
(BLAST)

001: MSSKFPLGVR FITHSLPCTR LASMNSGALI YSFRSVPVLS KAFPFRLKYI GLGSRVNFST RPERSQPEFA RRSGAGGEIR ASKSLIEDEA ELSDWVSDLR
101: TSSLRGKFTS DEDNADPEVV RRNVDRDTSR GPRRGREGQS DRFGGAKRGK EGEMDRFGSP NRRRTSGEPA DSFGNKRLGD REGSRNGRVQ GKSSESSFRG
201: RSDRNVDSGS SFRGRSDKNV DSGSSFRGRN DRNVDSGSSF RGRSDRNVDS GSSFRGRSDR NVDSGSSFRG RNDRNVDSGS SFRGRNDRNV ESGFRREPGS
301: ENNRGLGKQT RGLSLEEEDS SDDDENRVGL GNIDDLPSED SSDEDDENDE PLIKKAASAK AVQTDKPTGE HVKTSDSYLS KTRFDQFPLS PLSLKAIKDA
401: GFETMTVVQE ATLPIILQGK DVLAKAKTGT GKTVAFLLPA IEAVIKSPPA SRDSRQPPII VLVVCPTREL ASQAAAEANT LLKYHPSIGV QVVIGGTKLP
501: TEQRRMQTNP CQILVATPGR LKDHIENTSG FATRLMGVKV LVLDEADHLL DMGFRRDIER IIAAVPKQRQ TFLFSATVPE EVRQICHVAL KRDHEFINCV
601: QEGSGETHQK VTQMYMIASL DRHFSLLHVL LKEHIADNVD YKVIIFCTTA MVTRLVADLL SQLSLNVREI HSRKPQSYRT RVSDEFRKSK AIILVTSDVS
701: ARGVDYPDVS LVVQMGLPSD REQYIHRLGR TGRKGKEGEG VLLLAPWEEY FMSSVKDLPI TKSPLPPIDP EAVKRVQKGL SQVEMKNKEA AYQAWLGYYK
801: SQKMIARDTT RLVELANEFS RSMGLDSPPA IPKNVLGKMG LKNVPGLRTK

Arabidopsis Description

RH26PDE340 [Source:UniProtKB/TrEMBL;Acc:A0A178UFQ6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.