Factsheet for HORVU6Hr1G020570.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 2
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G114900.1	Wheat	nucleus	73.14	90.59
TraesCS6D01G103400.1	Wheat	nucleus	70.85	90.32
TraesCS6B01G142500.1	Wheat	mitochondrion, nucleus	74.91	88.33
Zm00001d048477_P001	Maize	plastid	25.27	76.47
Os03t0669000-01	Rice	cytosol, nucleus, plastid	63.07	75.64
OQU93356	Sorghum	cytosol	59.89	74.67
Zm00001d014787_P001	Maize	nucleus	60.25	73.33
HORVU2Hr1G022490.2	Barley	nucleus	63.43	72.82
Os07t0660000-00	Rice	cytosol	54.42	69.21
VIT_01s0010g01890.t01	Wine grape	nucleus	47.17	64.96
Solyc10g007550.2.1	Tomato	cytosol, nucleus	49.65	64.01
KRH65120	Soybean	cytosol	49.47	63.78
KRH48210	Soybean	nucleus	35.16	62.19
CDY42845	Canola	cytosol	49.12	61.92
CDY47007	Canola	cytosol	49.12	61.92
Bra029342.1-P	Field mustard	cytosol	48.94	61.28
AT5G60990.1	Thale cress	nucleus	48.94	60.75
VIT_11s0065g01090.t01	Wine grape	cytosol	51.41	53.99
GSMUA_Achr8P34380_001	Banana	cytosol	54.24	42.23
HORVU2Hr1G028120.2	Barley	plastid	22.26	25.35
HORVU4Hr1G000640.1	Barley	cytosol, nucleus	21.38	24.35
HORVU3Hr1G054730.1	Barley	cytosol, mitochondrion, nucleus, plastid	22.08	23.23
HORVU5Hr1G010160.3	Barley	cytosol	22.97	21.59
HORVU1Hr1G004510.5	Barley	plastid	23.67	20.3
HORVU3Hr1G018130.7	Barley	plastid	22.26	18.61
HORVU5Hr1G093160.3	Barley	nucleus	26.68	18.17
HORVU6Hr1G093300.7	Barley	cytosol, nucleus	21.38	15.92
HORVU2Hr1G088480.2	Barley	nucleus, plastid	24.38	15.9
HORVU4Hr1G083970.6	Barley	nucleus	16.96	11.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:HORVU6Hr1G020570	EnsemblPlants:HORVU6Hr1G020570.1	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF78
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	SEG:seg

Description

No Description!

Coordinates

chrchr6H:-:58731625..58738221

Molecular Weight (calculated)

62428.4 Da

IEP (calculated)

10.072

GRAVY (calculated)

-0.184

Length

566 amino acids

Sequence
(BLAST)

001: GRSSRSTKLP LPLIPLGFMP PPPPCAPSSF SRRITSASAS GSTSPPIPHP TAAATRSPPP ARTRIPRRAR IAALVHGPHL PAAALDLSLP ELLPDHLVLC
101: PPKSKTTLVA MAVDKVLDSG GEVQRSEPEP EPASEASTFA ELGIFPELVE ACDAMGWKKP TKIQEGVIPH ALKGRDLIGL GQTGSGKTGA FALPIIQALI
201: EHRKPFFACV MLPTRELAIQ IAEQFEALGS AIGLVCSVLV GGVDRMQQVL SIAKRPHIVV GTPGRLLDHL KDTKGFSLTK VKYLVLDEAD KLLNLEFKES
301: LDEILNVVPK ERITYLFSAT MTKKVSKLQR ACLRNPVKVE VCSKYSIVDT LKHEWYLVPA DYKDCYLVHV LNEFLGSMTM IFVRTCESTR LLALTLRNLG
401: FKALSISGQM SQDKRLGALN KFKAKEFNIL ICTDVASRGL DIQGVDVVIN YDIPMNSKDY VHRVGRTARA GQSGYAVSLV NQFEALWFKM IEALLGKKIP
501: VRKADADEIL ILRERISDSK RIALTKLKED GGHKKRRRAD DEDEEEEDAP RGRRKPRPFK KSTRRR

Best Arabidopsis Sequence Match ( AT5G60990.1 )
(BLAST)

001: MEEENEVVKT FAELGVREEL VKACERLGWK NPSKIQAEAL PFALEGKDVI GLAQTGSGKT GAFAIPILQA LLEYVYDSEP KKGRRPDPAF FACVLSPTRE
101: LAIQIAEQFE ALGADISLRC AVLVGGIDRM QQTIALGKRP HVIVATPGRL WDHMSDTKGF SLKSLKYLVL DEADRLLNED FEKSLNQILE EIPLERKTFL
201: FSATMTKKVR KLQRACLRNP VKIEAASKYS TVDTLKQQYR FVAAKYKDCY LVYILSEMPE STSMIFTRTC DGTRFLALVL RSLGFRAIPI SGQMTQSKRL
301: GALNKFKAGE CNILVCTDVA SRGLDIPSVD VVINYDIPTN SKDYIHRVGR TARAGRSGVG ISLVNQYELE WYIQIEKLIG KKLPEYPAEE DEVLSLLERV
401: AEAKKLSAMN MKESGGRKRR GEDDEESERF LGGNKDRGNK ERGGNKDKKS SKKFKR

Arabidopsis Description

RH10DEAD-box ATP-dependent RNA helicase 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8GY84]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.