Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G455000.1 | Wheat | cytosol | 94.61 | 85.29 |
| TraesCS6D01G392700.1 | Wheat | cytosol | 93.82 | 84.68 |
| TraesCS6A01G409100.1 | Wheat | cytosol | 93.95 | 80.59 |
| GSMUA_Achr3P14380_001 | Banana | cytosol | 42.76 | 72.71 |
| EES07789 | Sorghum | mitochondrion | 76.32 | 70.47 |
| Os02t0826100-01 | Rice | cytosol | 75.0 | 70.28 |
| Zm00001d018516_P002 | Maize | mitochondrion | 74.08 | 68.83 |
| VIT_06s0004g07260.t01 | Wine grape | extracellular, vacuole | 12.37 | 58.75 |
| KRH41139 | Soybean | nucleus | 49.34 | 53.04 |
| VIT_02s0025g03950.t01 | Wine grape | mitochondrion | 52.24 | 52.65 |
| HORVU3Hr1G054730.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 34.74 | 49.07 |
| PGSC0003DMT400010896 | Potato | cytosol, nucleus, plastid | 50.0 | 47.15 |
| Solyc12g056340.1.1 | Tomato | cytosol, nucleus, plastid | 49.74 | 46.96 |
| CDY45370 | Canola | mitochondrion | 48.29 | 46.93 |
| Bra027808.1-P | Field mustard | mitochondrion | 48.16 | 46.86 |
| CDY49890 | Canola | mitochondrion | 47.76 | 46.54 |
| AT1G63250.1 | Thale cress | mitochondrion | 47.89 | 45.61 |
| KRH59841 | Soybean | nucleus | 30.39 | 43.67 |
| AT2G07750.1 | Thale cress | plastid | 47.5 | 42.72 |
| HORVU4Hr1G000640.1 | Barley | cytosol, nucleus | 18.16 | 27.77 |
| HORVU5Hr1G010160.3 | Barley | cytosol | 19.47 | 24.58 |
| HORVU1Hr1G004510.5 | Barley | plastid | 19.21 | 22.12 |
| HORVU2Hr1G022490.2 | Barley | nucleus | 14.08 | 21.7 |
| HORVU6Hr1G020570.1 | Barley | plastid | 15.92 | 21.38 |
| HORVU3Hr1G018130.7 | Barley | plastid | 17.11 | 19.2 |
| KRH54980 | Soybean | nucleus | 4.21 | 17.98 |
| HORVU2Hr1G028120.2 | Barley | plastid | 11.05 | 16.9 |
| HORVU5Hr1G093160.3 | Barley | nucleus | 17.89 | 16.37 |
| HORVU2Hr1G088480.2 | Barley | nucleus, plastid | 17.76 | 15.55 |
| HORVU4Hr1G083970.6 | Barley | nucleus | 11.05 | 9.62 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | UniProt:A0A287V879 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 | EnsemblPlantsGene:HORVU6Hr1G093300 | EnsemblPlants:HORVU6Hr1G093300.7 |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase |
| PFAM:PF00270 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 |
| PANTHER:PTHR24031:SF324 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI000B47E87D |
Description
No Description!
Coordinates
chrchr6H:-:579284474..579290771
Molecular Weight (calculated)
85689.8 Da
IEP (calculated)
9.484
GRAVY (calculated)
-0.505
Length
760 amino acids
Sequence
(BLAST)
(BLAST)
001: GAEDLWNDDD GPLRRARLPS QQKNAARTLP SGARMVDWKR VESGERPKPP RGGGDWKDWE ELDSGEPRAG RGAGNEQPRL PAAFSQRRGY GTVAPWWWQW
101: SPGSGTPSQR KEASFGFFGL KRCYSAMPPL SPRQESGAAL MPLGVRQLSE AGGGTKGTPP ALFYAQERLY SGAAPRRFGQ KWRPDSSDED EEVMPPAKRD
201: LRLAKFVASR EDESEDDEVG ETSAIRRKWS SAALRNCDMK RDRRPLKSYE EESDDITGRI QELREEIRNR EVLGAERRRY ESRGESVFTN KRFDECGISP
301: LTVKALTDAG YIHTTVVQEA ALPICHAGKD VLVKAKTGTG KSVAFLLPAI ESVLNAMKSH TNHRVSPIFA LVLCPTRELA VQVTAEANVL VKYHHGVGVQ
401: SLIGGTRFKL DQRRLESDPC QILVATPGRL LDHIENRSSF SVRLMGLKLL VLDEADHLLD LGFRKDIEKI ADSLPRQRQT LLFSATIPKE VRRVSQMVLN
501: KDHVFVDTVG LGAVETPTKV QQQYLVVPHE LHFHMVHRLL REHIDQEVDY KVIVFCTTAM VTEFMYIMLR DLKLNVREIH SRKPQLYRTR ISEEFRDSNR
601: LILVTSDVST RGVNYPDVTL VIQAGVPPGR EHYIHRLGRT GREGKSGKGI LLIAPWEEYF LNEIHDLPIE KAPVPQIDQE MKQKVDDSIK IVDMSIKEAA
701: YHAWLGYYNS IADVSRDKVM LADLASRFGV SIGMEKPPTL YRKTALKMGL KGVPGIRIRK
101: SPGSGTPSQR KEASFGFFGL KRCYSAMPPL SPRQESGAAL MPLGVRQLSE AGGGTKGTPP ALFYAQERLY SGAAPRRFGQ KWRPDSSDED EEVMPPAKRD
201: LRLAKFVASR EDESEDDEVG ETSAIRRKWS SAALRNCDMK RDRRPLKSYE EESDDITGRI QELREEIRNR EVLGAERRRY ESRGESVFTN KRFDECGISP
301: LTVKALTDAG YIHTTVVQEA ALPICHAGKD VLVKAKTGTG KSVAFLLPAI ESVLNAMKSH TNHRVSPIFA LVLCPTRELA VQVTAEANVL VKYHHGVGVQ
401: SLIGGTRFKL DQRRLESDPC QILVATPGRL LDHIENRSSF SVRLMGLKLL VLDEADHLLD LGFRKDIEKI ADSLPRQRQT LLFSATIPKE VRRVSQMVLN
501: KDHVFVDTVG LGAVETPTKV QQQYLVVPHE LHFHMVHRLL REHIDQEVDY KVIVFCTTAM VTEFMYIMLR DLKLNVREIH SRKPQLYRTR ISEEFRDSNR
601: LILVTSDVST RGVNYPDVTL VIQAGVPPGR EHYIHRLGRT GREGKSGKGI LLIAPWEEYF LNEIHDLPIE KAPVPQIDQE MKQKVDDSIK IVDMSIKEAA
701: YHAWLGYYNS IADVSRDKVM LADLASRFGV SIGMEKPPTL YRKTALKMGL KGVPGIRIRK
001: MYSLILRERS GSITGSLWNR ISSRNMGGGP RTFPGGLNKW QWKRMHEKKA REKENKLLDQ EKQLYEARIR TEIRAKMWGN PDSGEKTAKS KQSHGPMSPK
101: EHIKTLADRF MKAGAEDFWN ENDGPVKKSD QGSRSGSDSI DSTSNSPIDV RRLVSATCDS MGKNRVFGSS RRGFSSMSRF KRNESSCDEG DDFDAKKLDT
201: LSPFSPKFAG TKEKVKSSRS VVGVIRNKGL FGRRKFRKND SSTEEDSDEE GDEGKMIGWM DMRKTGSSAS LGNHDIKLTK RVNRNVTDEE LYPPLDINTV
301: REDLSKRKSV DNVMEEKQEP HDSIYSAKRF DESCISPLTL KALSASGILK MTRVQDATLS ECLDGKDALV KAKTGTGKSM AFLLPAIETV LKAMNSGKGV
401: NKVAPIFALI LCPTRELASQ IAAEGKALLK FHDGIGVQTL IGGTRFKLDQ QRLESEPCQI LIATPGRLLD HIENKSGLTS RLMALKLFIV DEADLLLDLG
501: FRRDVEKIID CLPRQRQSLL FSATIPKEVR RVSQLVLKRD HSYIDTIGLG CVETHDKVRQ SCIVAPHESH FHLVPHLLKE HINNTPDYKI IVFCSTGMVT
601: SLMYTLLREM KLNVREIHAR KPQLHRTRVS DEFKESNRLI LVTSDVSARG MNYPDVTLVI QVGIPSDREQ YIHRLGRTGR EGKGGEGLLL IAPWERYFLD
701: ELKDLPLEPI PAPDLDSIVK HQVDQSMAKI DTSIKEAAYH AWLGYYNSVR ETGRDKTTLA ELANRFCHSI GLEKPPALFR RTAVKMGLKG ISGIPIRK
101: EHIKTLADRF MKAGAEDFWN ENDGPVKKSD QGSRSGSDSI DSTSNSPIDV RRLVSATCDS MGKNRVFGSS RRGFSSMSRF KRNESSCDEG DDFDAKKLDT
201: LSPFSPKFAG TKEKVKSSRS VVGVIRNKGL FGRRKFRKND SSTEEDSDEE GDEGKMIGWM DMRKTGSSAS LGNHDIKLTK RVNRNVTDEE LYPPLDINTV
301: REDLSKRKSV DNVMEEKQEP HDSIYSAKRF DESCISPLTL KALSASGILK MTRVQDATLS ECLDGKDALV KAKTGTGKSM AFLLPAIETV LKAMNSGKGV
401: NKVAPIFALI LCPTRELASQ IAAEGKALLK FHDGIGVQTL IGGTRFKLDQ QRLESEPCQI LIATPGRLLD HIENKSGLTS RLMALKLFIV DEADLLLDLG
501: FRRDVEKIID CLPRQRQSLL FSATIPKEVR RVSQLVLKRD HSYIDTIGLG CVETHDKVRQ SCIVAPHESH FHLVPHLLKE HINNTPDYKI IVFCSTGMVT
601: SLMYTLLREM KLNVREIHAR KPQLHRTRVS DEFKESNRLI LVTSDVSARG MNYPDVTLVI QVGIPSDREQ YIHRLGRTGR EGKGGEGLLL IAPWERYFLD
701: ELKDLPLEPI PAPDLDSIVK HQVDQSMAKI DTSIKEAAYH AWLGYYNSVR ETGRDKTTLA ELANRFCHSI GLEKPPALFR RTAVKMGLKG ISGIPIRK
Arabidopsis Description
RH48Probable DEAD-box ATP-dependent RNA helicase 48 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8S9]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.