Factsheet for HORVU1Hr1G004510.5

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
TargetP:	mitochondrion
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G031400.1	Wheat	nucleus	90.61	97.71
TraesCS1A01G030500.1	Wheat	nucleus	90.45	97.55
TraesCS1B01G037600.1	Wheat	nucleus	90.76	97.24
Os05t0110500-02	Rice	nucleus	77.58	86.63
EES18259	Sorghum	nucleus	74.85	82.33
Zm00001d010225_P001	Maize	plasma membrane	63.64	81.71
KRH12590	Soybean	nucleus	53.33	64.83
GSMUA_Achr7P18160_001	Banana	nucleus	56.67	64.04
PGSC0003DMT400006153	Potato	nucleus	51.06	63.11
VIT_11s0016g00630.t01	Wine grape	nucleus	56.97	62.67
KRH37539	Soybean	nucleus	50.76	62.15
PGSC0003DMT400006154	Potato	nucleus	55.15	60.97
Solyc07g042270.2.1	Tomato	nucleus	54.7	60.47
Bra004584.1-P	Field mustard	nucleus	53.64	57.65
AT2G40700.1	Thale cress	nucleus	52.58	56.89
CDX79974	Canola	nucleus	53.64	51.45
CDY23886	Canola	plasma membrane	53.94	50.78
HORVU4Hr1G000640.1	Barley	cytosol, nucleus	25.0	33.2
HORVU5Hr1G010160.3	Barley	cytosol	25.91	28.41
HORVU3Hr1G054730.1	Barley	cytosol, mitochondrion, nucleus, plastid	21.67	26.58
HORVU2Hr1G022490.2	Barley	nucleus	18.33	24.54
HORVU6Hr1G020570.1	Barley	plastid	20.3	23.67
HORVU3Hr1G018130.7	Barley	plastid	24.09	23.49
HORVU6Hr1G093300.7	Barley	cytosol, nucleus	22.12	19.21
HORVU5Hr1G093160.3	Barley	nucleus	21.67	17.21
HORVU2Hr1G028120.2	Barley	plastid	12.88	17.1
HORVU2Hr1G088480.2	Barley	nucleus, plastid	20.76	15.78
HORVU4Hr1G083970.6	Barley	nucleus	16.36	12.37

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A287EI83	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0016787	EnsemblPlantsGene:HORVU1Hr1G004510	EnsemblPlants:HORVU1Hr1G004510.5	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFAM:PF13959	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF89
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SMART:SM01178	SUPFAM:SSF52540	UniParc:UPI000B4897F2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr1H:-:9238843..9242299

Molecular Weight (calculated)

73739.8 Da

IEP (calculated)

10.119

GRAVY (calculated)

-0.272

Length

660 amino acids

Sequence
(BLAST)

001: KTSPLFPLRL ALNPLPSSSL SMAAKRKLGR PPPAATPAAP KAKEDDAEGL FSSRSFADLG LHPTLCAHLQ DKMGFQGPTR IQAQAIPVAM SGQHLLVKAA
101: TGTGKTLAYL APIVHLLQMR EPRVERTHGT FALVIVPTRE LCLQVYGIAQ QLVHRFHWLV PGYVMGGESR SKEKARLRKG ISILIATPGR LLDHLQHTSS
201: FVYSNLRWIV FDEADSILEL GFGKAVEDIL GLLGSRNDAS DENKSKTDPM QRQNLLLSAT LNEKVNRLAN ISLKNPVMIG LDEQKKPSER SSALGKKHTS
301: LLSDDEEEIP DKHNNIVEPA VDDFKLPAQL VQRYVKGSGN LLAWKFTCLS CVVLVVDGLM HCFLFYAVSC GSRLAVLLTI LKSQFEKQVS QKVVVFMSTC
401: DAVDFHHTVL SQLEWSRGLA LDTDKKQKFL GCKVFRLHGN MDQEDRKKSY LGFSSEKSAI LVCTDVAARG LDIPKVRCII QYDSPGEASE YVHRVGRTAR
501: IGEKGEALLF LQPVEIDYLR DLELHGVSLT EYPFQKVLDG FPVNGEKPLK RKPISLDMHP WILSVQRTLE NYVASEATTN KLARDAFCSW LRAYTAHRGE
601: LKKIFMVKKL HLGHVARSFG LKEQPSLVGR SHQVQLKKRK KEQKREGQGP TKRRKFPTKK

Best Arabidopsis Sequence Match ( AT2G40700.1 )
(BLAST)

001: MMKRAQQSAR ETKQEAKDAS KAKSGLFASC SFSSLGLDTK LSDQLKERMG FEAPTLVQAQ AIPVILSGRD VLVNAPTGTG KTIAYLAPLI HHLQGHSPKV
101: DRSHGTFALV IVPTRELCLQ VYETLEKLLH RFHWIVPGYV MGGEKKAKEK ARLRKGISIL IATPGRLLDH LKNTASFVHK NLRWVIFDEA DSILELGYGK
201: EIEQIIKLLG SGQNEQGEED DIVPKGIQKQ NLLLSATLND KVNDLAKLSL DDPVMIGLDN TKLQQNLSIE SPAAPDSDAE DMVIHVNKSA NPLSEDYGIP
301: SQLVQRYLRV PCGARLVALL SVLKNLFERE ASQKVVVFFS TRDAVDFHYS LLSEFQWPPN SETEEEGTKE LFLKCKTFRL HGSMEQEDRR SAFGTFKTEK
401: QAVLLSTDVA ARGLDFPKVR CIIQYDCPGE ATEYVHRVGR TARIGEKGEA LLFLQPIEID YLKELKKHGA SLTEYPLMKV LDKFPIPGNM PRIKKVLSLE
501: SHPWVISLQR ALESLTYAEP KMKSLAKNAF VSWVRGYAAH KGELKSIFVV KKLHLGHVAK SFALREQPSL VGKSHHKETM KRKRDERQKG QQGKKRKKMS
601: GTGNRSTQKT

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT2G40700]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.