Factsheet for PGSC0003DMT400006154

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006153	Potato	nucleus	88.78	99.25
Solyc07g042270.2.1	Tomato	nucleus	97.49	97.49
KRH12590	Soybean	nucleus	66.5	73.11
VIT_11s0016g00630.t01	Wine grape	nucleus	72.03	71.67
KRH37539	Soybean	nucleus	63.99	70.87
Os05t0110500-02	Rice	nucleus	62.31	62.94
AT2G40700.1	Thale cress	nucleus	63.99	62.62
GSMUA_Achr7P18160_001	Banana	nucleus	61.14	62.5
Bra004584.1-P	Field mustard	nucleus	63.48	61.73
EES18259	Sorghum	nucleus	61.64	61.33
Zm00001d010225_P001	Maize	plasma membrane	52.09	60.51
TraesCS1D01G031400.1	Wheat	nucleus	61.14	59.64
TraesCS1A01G030500.1	Wheat	nucleus	60.8	59.31
TraesCS1B01G037600.1	Wheat	nucleus	60.3	58.44
CDX79974	Canola	nucleus	63.82	55.38
HORVU1Hr1G004510.5	Barley	plastid	60.97	55.15
CDY23886	Canola	plasma membrane	64.15	54.64
PGSC0003DMT400063252	Potato	nucleus	29.98	31.63
PGSC0003DMT400029241	Potato	cytosol	22.11	27.1
PGSC0003DMT400057606	Potato	nucleus	23.45	22.47
PGSC0003DMT400025551	Potato	nucleus	24.79	19.87
PGSC0003DMT400057202	Potato	nucleus	24.79	19.6
PGSC0003DMT400003801	Potato	nucleus	22.78	17.06
PGSC0003DMT400000611	Potato	mitochondrion	24.29	16.65
PGSC0003DMT400010896	Potato	cytosol, nucleus, plastid	22.11	16.38

Protein Annotations

EntrezGene:102593698	Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	UniProt:M0ZQX3	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF13959
EnsemblPlantsGene:PGSC0003DMG401002393	PGSC:PGSC0003DMG401002393	EnsemblPlants:PGSC0003DMT400006154	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF89	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SMART:SM01178	SUPFAM:SSF52540	UniParc:UPI000296C682	RefSeq:XP_006353788.1	:

Description

Dead box ATP-dependent RNA helicase [Source:PGSC_GENE;Acc:PGSC0003DMG401002393]

Coordinates

chr7:-:40052400..40059922

Molecular Weight (calculated)

67692.3 Da

IEP (calculated)

10.061

GRAVY (calculated)

-0.360

Length

597 amino acids

Sequence
(BLAST)

001: MELNLNKKKK QKTENSSTGN SEVFASCSFE SLGLHTTLCE QLKERLGFEA PTLVQAQAIP VILSGRHVLV NAATGTGKTV AYLAPVIHQL QKCDPRIQRS
101: DGTFALVLVP THELCMQVYE ILQKLLHRFH WIVPGYIMGG ESRNKEKARL RKGISILVAT PGRLLDHLKN TSSFSYTNLR WIIFDEADRI LELGYGKEIE
201: DILNILGSKQ QKSVGKGNTT SQISEVQRQN VLLSATLNEK VNHLAEISLD NPVMVGLDKK IELQLTHQDS KPMEFNGNDI LEKDGKPLSS STEEYKLPAQ
301: LLQRYIKVPC GSRLVVLLAI LKHLFEKEPS QKVVVFFSTC DAVDFHYSLV SGFQWLSRQQ SDTDVKQLFL KCNTLRLHGN MNHEDRRTTF HAFKTEKSAL
401: LLSTDVAARG LDFPKVRCII QYDPPGEATE YVHRVGRTAR IGEKGDSLLF LQPVETDYLP GLEKHGVMLT EYPLQKLLDS FPLFGMRYHP KNFVSVDTHP
501: WVVSLQKALE SFTSSELKMK KMAQNAFCSW VRAYTAHRGE LKGIFMVKKL HLGHVARSFA LKEQPSLVNK SLQKQTKKRM RDQKQKNVSK KRKVGKR

Best Arabidopsis Sequence Match ( AT2G40700.1 )
(BLAST)

001: MMKRAQQSAR ETKQEAKDAS KAKSGLFASC SFSSLGLDTK LSDQLKERMG FEAPTLVQAQ AIPVILSGRD VLVNAPTGTG KTIAYLAPLI HHLQGHSPKV
101: DRSHGTFALV IVPTRELCLQ VYETLEKLLH RFHWIVPGYV MGGEKKAKEK ARLRKGISIL IATPGRLLDH LKNTASFVHK NLRWVIFDEA DSILELGYGK
201: EIEQIIKLLG SGQNEQGEED DIVPKGIQKQ NLLLSATLND KVNDLAKLSL DDPVMIGLDN TKLQQNLSIE SPAAPDSDAE DMVIHVNKSA NPLSEDYGIP
301: SQLVQRYLRV PCGARLVALL SVLKNLFERE ASQKVVVFFS TRDAVDFHYS LLSEFQWPPN SETEEEGTKE LFLKCKTFRL HGSMEQEDRR SAFGTFKTEK
401: QAVLLSTDVA ARGLDFPKVR CIIQYDCPGE ATEYVHRVGR TARIGEKGEA LLFLQPIEID YLKELKKHGA SLTEYPLMKV LDKFPIPGNM PRIKKVLSLE
501: SHPWVISLQR ALESLTYAEP KMKSLAKNAF VSWVRGYAAH KGELKSIFVV KKLHLGHVAK SFALREQPSL VGKSHHKETM KRKRDERQKG QQGKKRKKMS
601: GTGNRSTQKT

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT2G40700]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.