Factsheet for Os05t0110500-02

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES18259	Sorghum	nucleus	86.63	85.33
Zm00001d010225_P001	Maize	plasma membrane	73.94	85.02
TraesCS1A01G030500.1	Wheat	nucleus	86.29	83.33
TraesCS1D01G031400.1	Wheat	nucleus	85.96	83.01
TraesCS1B01G037600.1	Wheat	nucleus	86.46	82.95
HORVU1Hr1G004510.5	Barley	plastid	86.63	77.58
KRH12590	Soybean	nucleus	59.39	64.64
GSMUA_Achr7P18160_001	Banana	nucleus	63.62	64.38
PGSC0003DMT400006153	Potato	nucleus	57.7	63.86
VIT_11s0016g00630.t01	Wine grape	nucleus	63.45	62.5
KRH37539	Soybean	nucleus	56.85	62.34
PGSC0003DMT400006154	Potato	nucleus	62.94	62.31
Solyc07g042270.2.1	Tomato	nucleus	62.27	61.64
Bra004584.1-P	Field mustard	nucleus	59.39	57.17
AT2G40700.1	Thale cress	nucleus	58.88	57.05
CDX79974	Canola	nucleus	59.39	51.02
CDY23886	Canola	plasma membrane	59.56	50.21
Os06t0535100-00	Rice	nucleus	29.95	30.41
Os03t0802700-01	Rice	nucleus	30.12	30.17
Os07t0660000-00	Rice	cytosol	22.5	29.89
Os03t0669000-01	Rice	cytosol, nucleus, plastid	23.52	29.45
Os07t0633500-00	Rice	nucleus	18.1	26.55
Os01t0618500-01	Rice	nucleus	23.86	26.31
Os01t0618400-01	Rice	nucleus, plasma membrane	23.52	23.4
Os01t0164500-01	Rice	plastid	25.21	23.03
Os12t0481100-01	Rice	nucleus	24.03	17.71
Os08t0416100-01	Rice	nucleus	25.04	17.39
Os02t0826100-01	Rice	cytosol	23.86	17.39
Os04t0510400-01	Rice	nucleus	22.67	16.11
Os07t0517000-01	Rice	nucleus	14.04	15.84
Os06t0526600-01	Rice	mitochondrion	22.67	14.52

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:4337589	ProteinID:AAK73153.1	ProteinID:AAU44200.1	EMBL:AK060179
EMBL:AK066175	ProteinID:BAF16354.2	ProteinID:BAS91914.1	ProteinID:BAS91915.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217
ProteinID:EEE62071.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	GO:GO:0042254	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EnsemblPlantsGene:Os05g0110500	EnsemblPlants:Os05t0110500-02
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF13959	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF89	UniProt:Q0DLB9	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SMART:SM01178	SUPFAM:SSF52540	UniParc:UPI0000F5349C	RefSeq:XP_015640476.1	SEG:seg

Description

RNA helicase 17Similar to DEAD-box ATP-dependent RNA helicase 17. (Os05t0110500-01);DEAD-box RNA helicase protein, Stress responses (Os05t0110500-02)

Coordinates

chr5:+:562926..566453

Molecular Weight (calculated)

66907.5 Da

IEP (calculated)

10.160

GRAVY (calculated)

-0.370

Length

591 amino acids

Sequence
(BLAST)

001: MAKKLGKSPV AKEEDKEGLF ASCSFTDLGL HPTLCAHLQD KMGFQAPTRI QAQAIPVAMS GQHMLVKAAT GTGKTLAYLA PIVHLLQMRE PRVERTDGTF
101: ALVLVPTREL CLQVYGIAQQ LVHRFHWLVP GYIMGGENRA KEKARLRKGI SILIATPGRL LDHLQHTSSF VYPNMRWIVF DEADSILELG FGKALEDILE
201: HLGSRNDTSN QNKNKMEPMK RQNLLLSATL NEKVNRLAKI SLKNPVMIGL DEQNSSAHGK NHTSLLSDDE EEILEKHNVT VEQAVDDFKL PAQLVQRYVK
301: VSCGSRLAIL LTILKSLFER QLSHKVVVFL STCDSVDFHH TVLSQLEWSP GLQLDTDKKQ KFISCKVFRL HGNMDQDDRK KSFLGFSSEK SAILVSTDVA
401: ARGLDFPKVK CIIQYDSPGE ASEYVHRVGR TARIGEKGEA LLFLQPIETD YLRDLELHGA SLTEYPLQKV LDSFPVNGQR LHKRKQISLD MHPWIMSLQR
501: ALESFVTSED TTKKLARDAF CSWVRAYTAH RGELKKIFMV KKLHLGHVAR SFGLKEQPSL LGRSHQVQLK KRKKEQKRER PAKRRKIPAK R

Best Arabidopsis Sequence Match ( AT2G40700.1 )
(BLAST)

001: MMKRAQQSAR ETKQEAKDAS KAKSGLFASC SFSSLGLDTK LSDQLKERMG FEAPTLVQAQ AIPVILSGRD VLVNAPTGTG KTIAYLAPLI HHLQGHSPKV
101: DRSHGTFALV IVPTRELCLQ VYETLEKLLH RFHWIVPGYV MGGEKKAKEK ARLRKGISIL IATPGRLLDH LKNTASFVHK NLRWVIFDEA DSILELGYGK
201: EIEQIIKLLG SGQNEQGEED DIVPKGIQKQ NLLLSATLND KVNDLAKLSL DDPVMIGLDN TKLQQNLSIE SPAAPDSDAE DMVIHVNKSA NPLSEDYGIP
301: SQLVQRYLRV PCGARLVALL SVLKNLFERE ASQKVVVFFS TRDAVDFHYS LLSEFQWPPN SETEEEGTKE LFLKCKTFRL HGSMEQEDRR SAFGTFKTEK
401: QAVLLSTDVA ARGLDFPKVR CIIQYDCPGE ATEYVHRVGR TARIGEKGEA LLFLQPIEID YLKELKKHGA SLTEYPLMKV LDKFPIPGNM PRIKKVLSLE
501: SHPWVISLQR ALESLTYAEP KMKSLAKNAF VSWVRGYAAH KGELKSIFVV KKLHLGHVAK SFALREQPSL VGKSHHKETM KRKRDERQKG QQGKKRKKMS
601: GTGNRSTQKT

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT2G40700]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.