Factsheet for Os12t0481100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G378100.1	Wheat	nucleus	81.17	83.57
TraesCS5D01G385400.1	Wheat	nucleus	81.05	83.55
TraesCS5A01G375900.1	Wheat	nucleus	80.3	82.78
Zm00001d021127_P001	Maize	nucleus, plasma membrane	78.55	81.82
KXG35997	Sorghum	nucleus	80.92	81.74
Zm00001d006113_P001	Maize	nucleus	77.93	79.21
HORVU5Hr1G093160.3	Barley	nucleus	79.55	76.78
GSMUA_Achr8P12970_001	Banana	nucleus	68.58	71.8
VIT_18s0001g14540.t01	Wine grape	nucleus	63.59	69.67
KRH37947	Soybean	plastid	51.12	69.61
KRH37970	Soybean	cytosol	27.31	68.44
Solyc04g081580.2.1	Tomato	nucleus	63.22	68.15
PGSC0003DMT400025551	Potato	nucleus	63.09	67.92
KRH46113	Soybean	nucleus	63.72	67.5
KRG98832	Soybean	nucleus	63.34	66.93
CDY40519	Canola	nucleus	57.11	60.42
AT4G16630.1	Thale cress	nucleus	59.35	60.33
CDY50846	Canola	nucleus	60.1	57.45
CDY53643	Canola	nucleus	60.22	57.23
Bra040743.1-P	Field mustard	nucleus	60.47	55.49
Bra038492.1-P	Field mustard	nucleus	54.74	48.35
CDY32273	Canola	nucleus	54.61	47.97
Os03t0669000-01	Rice	cytosol, nucleus, plastid	19.2	32.63
Os07t0660000-00	Rice	cytosol	17.96	32.36
Os07t0633500-00	Rice	nucleus	15.96	31.76
Os03t0802700-01	Rice	nucleus	19.33	26.27
Os06t0535100-00	Rice	nucleus	18.33	25.26
Os01t0618500-01	Rice	nucleus	16.71	25.0
Os05t0110500-02	Rice	nucleus	17.71	24.03
Os01t0618400-01	Rice	nucleus, plasma membrane	17.71	23.91
Os01t0164500-01	Rice	plastid	18.7	23.18
Os04t0510400-01	Rice	nucleus	21.32	20.55
Os02t0826100-01	Rice	cytosol	19.08	18.87
Os08t0416100-01	Rice	nucleus	19.95	18.8
Os06t0526600-01	Rice	mitochondrion	17.58	15.28
Os07t0517000-01	Rice	nucleus	8.98	13.74

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:4352218	ProteinID:ABA98487.1	EMBL:AK073151	ProteinID:BAF29790.1
ProteinID:BAT17143.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	ProteinID:EAZ20482.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
EnsemblPlantsGene:Os12g0481100	EnsemblPlants:Os12t0481100-01	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF541	UniProt:Q0INC5
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000068111C
RefSeq:XP_015620340.1	SEG:seg	:	:	:	:

Description

RNA helicase 28Similar to cDNA clone:J033010C22, full insert sequence. (Os12t0481100-01)

Coordinates

chr12:-:17684802..17694915

Molecular Weight (calculated)

89512.5 Da

IEP (calculated)

5.083

GRAVY (calculated)

-0.755

Length

802 amino acids

Sequence
(BLAST)

001: MDADFRFDPD GSDDDGAAAS AAAGRRKPAQ SPWEFSSYAE SVAAEHARRR TTSIDEKISQ ALSGSRRGGK PSIPDGDSEG DEDDSEVEDD SEEDDKEVVE
101: GEIDDEEDEV EESEDDDEGV EVSDEEVEEL EEGKGEEKSD EVEEGEEGQD GEEEEKEEGD EEAAEEEEET DKKSGVVDPS KFFASSEGAS FHANSFLELN
201: LSRPLLRACE ALGYQKPTPI QAACIPLALT GRDICGSAIT GSGKTAAFSL PVLERLLFRP KRVPAIRVLI LTPTRELAAQ VHSMIEKLAQ FTDIRCCLIV
301: GGLSTKVQEV ALRSMPDIVV ATPGRIIDHL RNSLSVGLED LAILILDEAD RLLELGFSAE IQELIRMCPR RRQTMLFSAT MTEEINELVT LSLNKPVRLE
401: ADPSLKRPAT LTEEVVRIRR AREANQEAVL LALCLKTFKD KVIIFSGTKH SAHRLKIIFG LSGMKAAELH GNLTQAQRLE ALELFKKQEV DFLIATDVAA
501: RGIDIVGVRT VINFSCPRDA RTYLHRVGRT ARAGREGYAV TFVTDDDRSL LKAIAKKAGS QLKSRIVAEK PVAECAKLIE ELEDQISTII QEEREERILR
601: KAEMEATKAE NMIAHKDEIY SRPKRTWFAT EKEKKLLAKA AKESTSQGKS NSGVISAQQA EDLRLKEKKR REREKNLPRK KRRRLEAERE MLEDESEDEE
701: EAKESKGGKK EKKGQSLVDV AYRRAKSMKA SGKRGAGTGK GKNDKKAKQH SGKGPTRQEE MQELFQNDMS EWKQGRSLKK NNVMRKKSKN SFKSKSRYNR
801: RK

Best Arabidopsis Sequence Match ( AT4G16630.1 )
(BLAST)

001: MPSSFFFEDA SDDELELIRN QEDSSEEDVK EGEAEEHEAG EDEDGEEEYE EEDDDEEEED EKRKRDADAQ SPWDFASYSS SVGEEHARRH TTSIDEKISK
101: AIQHRPVPIS INEEEEEEEE EEDASDAETD KQEEYLSEDD EAAEYKPEDA TPKPFFSTVD GVSFHADTFM ELNLSRPLLR ACETLGYKKP TPIQAACIPL
201: ALTGRDLCAS AITGSGKTAA FALPTLERLL FRPKRVFATR VLILTPTREL AVQIHSMIQN LAQFTDIKCG LIVGGLSVRE QEVVLRSMPD IVVATPGRMI
301: DHLRNSMSVD LDDLAVLILD EADRLLQTGF ATEITELVRL CPKRRQTMLF SATMTEEVKE LVKLSLNKPL RLSADPSARR PPGLTEEVVR IRRTREANQE
401: AVLLSLCTRT FKSKVIIFSG TKQAAHRLKI LFGLAGLKAA ELHGNLTQAQ RLDSLELFRK QEVDFLIATD VAARGLDIIG VQTVINYACP REIDSYVHRV
501: GRTARAGREG YAVTFVTDSD RSLLKVIAKK VGSKLKSRVI PEQSIVKWSQ IIDEMEDQYS AVISAERDER ALRKAEMEFA KAENMLEHRD EIYARPKRTW
601: FMTEKEKKLV AQAEKDSAGN PAGGELVSAD RAEDLKMKEK RKREREKNLP RKKRRKLEAA REMLEDNEGE EEEEDEEGDE KRGRSRGKDK KKQETDKKGL
701: TLKDLGYMRA KAVKAKQRAI DSGKMERPKP DKKQSRSKPR NQPRGEEMKD LFKSDMGEKK QGRGGAAAAA KPRTKSKNSF KSKARYKRR

Arabidopsis Description

RH28DEAD-box ATP-dependent RNA helicase 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZRZ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.