Factsheet for Zm00001d006113_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG35997	Sorghum	nucleus	93.03	92.44
Zm00001d021127_P001	Maize	nucleus, plasma membrane	88.59	90.78
TraesCS5D01G385400.1	Wheat	nucleus	77.06	78.15
TraesCS5B01G378100.1	Wheat	nucleus	77.06	78.05
Os12t0481100-01	Rice	nucleus	79.21	77.93
TraesCS5A01G375900.1	Wheat	nucleus	76.81	77.89
HORVU5Hr1G093160.3	Barley	nucleus	77.06	73.16
GSMUA_Achr8P12970_001	Banana	nucleus	68.57	70.63
KRH37970	Soybean	cytosol	28.01	69.06
KRH37947	Soybean	plastid	50.7	67.91
VIT_18s0001g14540.t01	Wine grape	nucleus	62.36	67.21
KRH46113	Soybean	nucleus	63.37	66.05
KRG98832	Soybean	nucleus	62.86	65.35
Solyc04g081580.2.1	Tomato	nucleus	61.47	65.19
PGSC0003DMT400025551	Potato	nucleus	61.34	64.97
AT4G16630.1	Thale cress	nucleus	59.32	59.32
CDY40519	Canola	nucleus	56.91	59.23
CDY50846	Canola	nucleus	59.32	55.78
CDY53643	Canola	nucleus	59.44	55.57
Bra040743.1-P	Field mustard	nucleus	59.7	53.89
Bra038492.1-P	Field mustard	nucleus	54.63	47.47
CDY32273	Canola	nucleus	54.63	47.21
Zm00001d048477_P001	Maize	plastid	7.73	32.62
Zm00001d014787_P001	Maize	nucleus	19.14	32.47
Zm00001d022246_P001	Maize	cytosol	19.9	30.19
Zm00001d027279_P001	Maize	nucleus	10.39	28.77
Zm00001d024719_P001	Maize	nucleus	11.91	27.81
Zm00001d044203_P001	Maize	plasma membrane	17.74	25.0
Zm00001d000431_P001	Maize	plastid	15.21	24.69
Zm00001d044208_P001	Maize	plastid	17.87	24.06
Zm00001d013056_P001	Maize	nucleus	19.26	23.17
Zm00001d010225_P001	Maize	plasma membrane	14.7	22.57
Zm00001d023501_P001	Maize	nucleus	17.24	22.55
Zm00001d041799_P001	Maize	cytosol	7.48	22.35
Zm00001d039746_P001	Maize	nucleus	18.5	20.14
Zm00001d050315_P001	Maize	nucleus	21.17	19.88
Zm00001d003031_P002	Maize	nucleus	20.53	19.15
Zm00001d002007_P002	Maize	cytosol, mitochondrion, plastid	8.49	18.51
Zm00001d018516_P002	Maize	mitochondrion	19.14	18.46
Zm00001d006497_P002	Maize	nucleus	17.36	18.32
Zm00001d032317_P001	Maize	nucleus	10.27	16.56
Zm00001d046097_P001	Maize	mitochondrion	18.63	15.71

Protein Annotations

EntrezGene:100274080	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6ESZ2	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	ProteinID:ONM22834.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF541	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0004DEA3A3	EnsemblPlantsGene:Zm00001d006113
EnsemblPlants:Zm00001d006113_P001	EnsemblPlants:Zm00001d006113_T001	SEG:seg	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 28

Coordinates

chr2:+:198798411..198822167

Molecular Weight (calculated)

87851.9 Da

IEP (calculated)

6.042

GRAVY (calculated)

-0.697

Length

789 amino acids

Sequence
(BLAST)

001: MDPSFRFDPD SSDDEAAGAP PRGGPVQSPW EFSSYAESVA AEHARRRTTS IDEKISLLRQ ERGNPVVPDD SGSDVSGSGE DDSDDEEIEG ESGDEEDELE
101: ESEDEGGVEG GTDDEEIEGS GDEEAIGDRE GDEDGGDEKG GGELGEEDDA HEEEDTVDQN DTSGPVDPSN FFSSSDRASF HANSFLELNL SRPLVRACEA
201: LGYQKPTPIQ AACIPLALTG RDICGSAITG SGKTAAFSLP VLERLLFRPK RVPAIRVLIL TPTRELAAQI HSMVEKLAQF TDIRCCLIVG GLSTKIQEVA
301: LRSMPDIVVA TPGRIIDHLR NSLSVGLEDL AVVILDEADR LLELGFSAEI QELIRMCPKR RQTMLFSATM TEEIDELVKL SLNKPVRLEA DPSLKRPATL
401: TEEVVRIRRA RESNQEAVLL ALCLKTFKRS VIIFSGTKQS AHRLKIIFGL SGMKAAELHG NLTQAQRLEA LELFKKKEVD FLIATDVAAR GIDIVGVQTV
501: INFACPRDVK TYLHRVGRTA RAGREGYAVT FVTDDDRCLL KAIAKKAGSQ LKSRIVAEKP VAECARLIEQ LEGQISIIIR EERVEREARK AEMEIAKAEN
601: MIAHKDEIYS RPKRTWFATE REKKLLAAAA KESLDHGKST SGVISAKKAE DLRLKEKRRR EHEKNLPRKK RRRLEAQREM LEDEDDEKTK ENDRGKQPMK
701: GQSLVDAAYR KAKSLKAASK RAPGARKGKK EKNERQHSEK APNRHEEMRD LFQNDMSEWK QGRSSKKNNK FAPKKSRNSF KSKARYKRK

Best Arabidopsis Sequence Match ( AT4G16630.1 )
(BLAST)

001: MPSSFFFEDA SDDELELIRN QEDSSEEDVK EGEAEEHEAG EDEDGEEEYE EEDDDEEEED EKRKRDADAQ SPWDFASYSS SVGEEHARRH TTSIDEKISK
101: AIQHRPVPIS INEEEEEEEE EEDASDAETD KQEEYLSEDD EAAEYKPEDA TPKPFFSTVD GVSFHADTFM ELNLSRPLLR ACETLGYKKP TPIQAACIPL
201: ALTGRDLCAS AITGSGKTAA FALPTLERLL FRPKRVFATR VLILTPTREL AVQIHSMIQN LAQFTDIKCG LIVGGLSVRE QEVVLRSMPD IVVATPGRMI
301: DHLRNSMSVD LDDLAVLILD EADRLLQTGF ATEITELVRL CPKRRQTMLF SATMTEEVKE LVKLSLNKPL RLSADPSARR PPGLTEEVVR IRRTREANQE
401: AVLLSLCTRT FKSKVIIFSG TKQAAHRLKI LFGLAGLKAA ELHGNLTQAQ RLDSLELFRK QEVDFLIATD VAARGLDIIG VQTVINYACP REIDSYVHRV
501: GRTARAGREG YAVTFVTDSD RSLLKVIAKK VGSKLKSRVI PEQSIVKWSQ IIDEMEDQYS AVISAERDER ALRKAEMEFA KAENMLEHRD EIYARPKRTW
601: FMTEKEKKLV AQAEKDSAGN PAGGELVSAD RAEDLKMKEK RKREREKNLP RKKRRKLEAA REMLEDNEGE EEEEDEEGDE KRGRSRGKDK KKQETDKKGL
701: TLKDLGYMRA KAVKAKQRAI DSGKMERPKP DKKQSRSKPR NQPRGEEMKD LFKSDMGEKK QGRGGAAAAA KPRTKSKNSF KSKARYKRR

Arabidopsis Description

RH28DEAD-box ATP-dependent RNA helicase 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZRZ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.