Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU81941 | Sorghum | nucleus | 92.08 | 92.52 |
| Os04t0510400-01 | Rice | nucleus | 77.66 | 78.97 |
| TraesCS2B01G384300.1 | Wheat | nucleus | 76.24 | 77.25 |
| TraesCS2D01G363700.1 | Wheat | nucleus | 76.24 | 77.15 |
| TraesCS2A01G366700.1 | Wheat | nucleus | 76.12 | 76.3 |
| HORVU2Hr1G088480.2 | Barley | nucleus, plastid | 76.24 | 74.31 |
| Bra021205.1-P | Field mustard | mitochondrion, nucleus, plastid | 45.04 | 60.57 |
| GSMUA_Achr5P10150_001 | Banana | nucleus | 54.61 | 60.0 |
| VIT_05s0049g02360.t01 | Wine grape | nucleus | 55.67 | 59.77 |
| PGSC0003DMT400003801 | Potato | nucleus | 54.73 | 58.09 |
| Solyc09g090740.2.1 | Tomato | nucleus | 54.49 | 57.7 |
| KRH48208 | Soybean | nucleus | 53.55 | 55.93 |
| KRH65117 | Soybean | plastid | 50.12 | 51.46 |
| CDY34979 | Canola | nucleus, plastid | 50.59 | 51.44 |
| CDY52719 | Canola | nucleus, plastid | 50.24 | 51.27 |
| AT3G16840.2 | Thale cress | nucleus | 49.17 | 50.3 |
| Zm00001d014787_P001 | Maize | nucleus | 16.19 | 29.46 |
| Zm00001d027279_P001 | Maize | nucleus | 9.22 | 27.37 |
| Zm00001d024719_P001 | Maize | nucleus | 10.87 | 27.22 |
| Zm00001d022246_P001 | Maize | cytosol | 15.84 | 25.77 |
| Zm00001d048477_P001 | Maize | plastid | 5.56 | 25.13 |
| Zm00001d044203_P001 | Maize | plasma membrane | 16.08 | 24.29 |
| Zm00001d000431_P001 | Maize | plastid | 13.83 | 24.07 |
| Zm00001d044208_P001 | Maize | plastid | 16.43 | 23.72 |
| Zm00001d041799_P001 | Maize | cytosol | 7.33 | 23.48 |
| Zm00001d021127_P001 | Maize | nucleus, plasma membrane | 19.5 | 21.43 |
| Zm00001d010225_P001 | Maize | plasma membrane | 12.88 | 21.21 |
| Zm00001d006113_P001 | Maize | nucleus | 19.15 | 20.53 |
| Zm00001d023501_P001 | Maize | nucleus | 14.54 | 20.4 |
| Zm00001d013056_P001 | Maize | nucleus | 15.25 | 19.66 |
| Zm00001d002007_P002 | Maize | cytosol, mitochondrion, plastid | 8.04 | 18.78 |
| Zm00001d039746_P001 | Maize | nucleus | 16.08 | 18.76 |
| Zm00001d050315_P001 | Maize | nucleus | 18.32 | 18.45 |
| Zm00001d006497_P002 | Maize | nucleus | 15.37 | 17.38 |
| Zm00001d018516_P002 | Maize | mitochondrion | 16.19 | 16.75 |
| Zm00001d046097_P001 | Maize | mitochondrion | 17.97 | 16.24 |
| Zm00001d032317_P001 | Maize | nucleus | 7.92 | 13.7 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | UniProt:A0A1D6E625 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 |
| ProteinID:ONM15920.1 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 |
| PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF91 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif |
| SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI000844A6E8 | EnsemblPlantsGene:Zm00001d003031 | EnsemblPlants:Zm00001d003031_P002 |
| EnsemblPlants:Zm00001d003031_T002 | SEG:seg | : | : | : | : |
Description
DEAD-box ATP-dependent RNA helicase 13
Coordinates
chr2:-:29817833..29830608
Molecular Weight (calculated)
94859.3 Da
IEP (calculated)
9.288
GRAVY (calculated)
-0.738
Length
846 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEPEPLPQV SSEPTTPPQE GSGRTKTKNK KNRSKKQPKR AGADTDGLSS GASTMVEDPF FVLAGGKEGG FLDLEEIDEA DFGIFGGVLD DVGQSVEEAG
101: KDHGKKKKKT KKRKRGGDGE GFSGDAALVV ENDQVDVEKV EKKVEDGEKG DKKGKRKMNM KKRKVKDNEM NRESDEDVAS DKAEDMQDDT ENMEQNEDDE
201: LILGEDDVSA WRELRLHPLL LKAMRRLGFK EPTPIQKSCF PAAAHRGKDV IGAAETGSGK TLAFGLPVLQ RLLEEREKAT RLQQEDEKME ERSCGSPLRA
301: LILTPTRELA KQVCDHLKDV AKFLGIHVVP IVGGLSMEKQ ERLLKKKPEI VVGTPGRLWE HMSMNNQHLV ELHSLSFFIL DEADRMIERG HFRELQSIIE
401: MLPLTNGSDE QAARTMPNCE TVPILQIKKR QTFVFSATLA LSSNFRKKLK RGLSTSKAST PDDVSSIEAL SKQAGMKSNA EIVDLTKASI LPEKLEESFI
501: ECSEEDKDAY LYYILSVHGQ GRTIIFCTSI AALRHISSIL RILGINVLTN HAQMQQRARM KAVDRFRESE NSILVATDGF ARGMDFDDVR TVIHYQLPHS
601: TDVYIHRSGR TARKSLAGCS IALISPTDKS RFYSLCKSLS KENLQQFPVD HTYMSGVMNR LSLARQIDKI ARKTSQASPH ENANKSWLQR NAESMGLILD
701: TSDSEEDHVQ GHKKRKATSA HLQKLQQELS DLLQCPLQPK TFSRRYLAGA GVSPLLQKQL EELAKRNASN NSSKSKNKGS GFVVIGQDRV EPLQALQNSG
801: QEVCVNIDKE REKRRVAENW RRKKHEEKKR TQEQKRKDKR KAKEMA
101: KDHGKKKKKT KKRKRGGDGE GFSGDAALVV ENDQVDVEKV EKKVEDGEKG DKKGKRKMNM KKRKVKDNEM NRESDEDVAS DKAEDMQDDT ENMEQNEDDE
201: LILGEDDVSA WRELRLHPLL LKAMRRLGFK EPTPIQKSCF PAAAHRGKDV IGAAETGSGK TLAFGLPVLQ RLLEEREKAT RLQQEDEKME ERSCGSPLRA
301: LILTPTRELA KQVCDHLKDV AKFLGIHVVP IVGGLSMEKQ ERLLKKKPEI VVGTPGRLWE HMSMNNQHLV ELHSLSFFIL DEADRMIERG HFRELQSIIE
401: MLPLTNGSDE QAARTMPNCE TVPILQIKKR QTFVFSATLA LSSNFRKKLK RGLSTSKAST PDDVSSIEAL SKQAGMKSNA EIVDLTKASI LPEKLEESFI
501: ECSEEDKDAY LYYILSVHGQ GRTIIFCTSI AALRHISSIL RILGINVLTN HAQMQQRARM KAVDRFRESE NSILVATDGF ARGMDFDDVR TVIHYQLPHS
601: TDVYIHRSGR TARKSLAGCS IALISPTDKS RFYSLCKSLS KENLQQFPVD HTYMSGVMNR LSLARQIDKI ARKTSQASPH ENANKSWLQR NAESMGLILD
701: TSDSEEDHVQ GHKKRKATSA HLQKLQQELS DLLQCPLQPK TFSRRYLAGA GVSPLLQKQL EELAKRNASN NSSKSKNKGS GFVVIGQDRV EPLQALQNSG
801: QEVCVNIDKE REKRRVAENW RRKKHEEKKR TQEQKRKDKR KAKEMA
001: MVTGDKESSL MKKRNKRSHK RKREEDFERI DSLPWSSSIP IGEDDEGESF STLFSGSGQL DGGFLSLEEI DEADYHLTLP TIESEITERK QSPEDDDDTN
101: ETVDEMIEGE EAEEDGEGRD DEDDEDDEET RKKKEKKAKR NKEKKKEKKK KKQKKINEAA KNQDASAAVS CDGDDTVEEQ VEEEEIPPEF SAWSSMRLHP
201: LLMKSIYRLD FKEPTKIQKA CFNVAAYQGK DVIGAAETGS GKTLAFGLPI LQRLLDEREK VGKLYALKGE EAQKYAADGY LRALIITPTR ELALQVTEHL
301: ENAAKNLSVK VVPIVGGMFS EKQERRLKEK PEIVVATPGR LWELMSAGEK HLVELHSLSF FVLDEADRMV ERGHFRELQS ILDLLPVTDK PNEGKTQTVK
401: SNDTVLNVPK KKRQTFVFSA TIALSSDFRK KLKRGSSKSK QSSSGEVNSI EVLSERAGMR DNVAIIDLTT TSILAPKIEE SFIKCEEKEK DAYLYYILSV
501: HGQGRTIVFC TSVTDLRHIS GLLKILGLDV CTLFSEMKQR ARLKSIDRFR ASENGILIAT DLVARGIDIK NVRTIIHYKL PHSAEVYVHR CGRTARAFAD
601: GCSIALIEPN ETSKFYTLCK SFSMESVKIF PLDNSYMPAV RKRLYLARQI YEIERKGSRE NADRTWLKKH AESMELELDD EESEEERVDN VRQRKATSAR
701: LNKLKEELST LLSHPMQPKK FSGRYFAGVG VSTLMQNQFV ELKKQKQAQM QIGGDIKRRK LVVINQNCIE PLQALRAGGN EMLKMKGQSA EKRRDIASLK
801: KKRKEEKIGR RDQRRNQKKQ RKLMASS
101: ETVDEMIEGE EAEEDGEGRD DEDDEDDEET RKKKEKKAKR NKEKKKEKKK KKQKKINEAA KNQDASAAVS CDGDDTVEEQ VEEEEIPPEF SAWSSMRLHP
201: LLMKSIYRLD FKEPTKIQKA CFNVAAYQGK DVIGAAETGS GKTLAFGLPI LQRLLDEREK VGKLYALKGE EAQKYAADGY LRALIITPTR ELALQVTEHL
301: ENAAKNLSVK VVPIVGGMFS EKQERRLKEK PEIVVATPGR LWELMSAGEK HLVELHSLSF FVLDEADRMV ERGHFRELQS ILDLLPVTDK PNEGKTQTVK
401: SNDTVLNVPK KKRQTFVFSA TIALSSDFRK KLKRGSSKSK QSSSGEVNSI EVLSERAGMR DNVAIIDLTT TSILAPKIEE SFIKCEEKEK DAYLYYILSV
501: HGQGRTIVFC TSVTDLRHIS GLLKILGLDV CTLFSEMKQR ARLKSIDRFR ASENGILIAT DLVARGIDIK NVRTIIHYKL PHSAEVYVHR CGRTARAFAD
601: GCSIALIEPN ETSKFYTLCK SFSMESVKIF PLDNSYMPAV RKRLYLARQI YEIERKGSRE NADRTWLKKH AESMELELDD EESEEERVDN VRQRKATSAR
701: LNKLKEELST LLSHPMQPKK FSGRYFAGVG VSTLMQNQFV ELKKQKQAQM QIGGDIKRRK LVVINQNCIE PLQALRAGGN EMLKMKGQSA EKRRDIASLK
801: KKRKEEKIGR RDQRRNQKKQ RKLMASS
Arabidopsis Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A178VJW0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.