CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003031_P002	Maize	nucleus	92.52	92.08
Os04t0510400-01	Rice	nucleus	78.86	79.81
TraesCS2D01G363700.1	Wheat	nucleus	77.2	77.75
TraesCS2B01G384300.1	Wheat	nucleus	77.08	77.72
TraesCS2A01G366700.1	Wheat	nucleus	76.96	76.78
HORVU2Hr1G088480.2	Barley	nucleus, plastid	77.43	75.12
Bra021205.1-P	Field mustard	mitochondrion, nucleus, plastid	45.96	61.53
VIT_05s0049g02360.t01	Wine grape	nucleus	56.77	60.66
GSMUA_Achr5P10150_001	Banana	nucleus	55.23	60.39
PGSC0003DMT400003801	Potato	nucleus	55.58	58.72
Solyc09g090740.2.1	Tomato	nucleus	55.58	58.57
KRH48208	Soybean	nucleus	54.28	56.42
KRH65117	Soybean	plastid	51.31	52.43
CDY52719	Canola	nucleus, plastid	51.43	52.23
CDY34979	Canola	nucleus, plastid	51.43	52.04
AT3G16840.2	Thale cress	nucleus	50.0	50.91
OQU93356	Sorghum	cytosol	16.86	31.28
KXG22990	Sorghum	cytosol	15.8	29.89
EER99761	Sorghum	cytosol	16.75	28.09
EES03287	Sorghum	cytosol	16.75	25.13
EES01082	Sorghum	mitochondrion, plastid	16.86	24.15
KXG37786	Sorghum	nucleus	12.71	23.62
EES18259	Sorghum	nucleus	15.91	22.33
OQU76491	Sorghum	nucleus	16.39	21.04
OQU76528	Sorghum	nucleus	14.96	21.04
EER90714	Sorghum	nucleus	15.32	20.71
EES00264	Sorghum	nucleus, plastid	15.68	20.5
KXG35997	Sorghum	nucleus	18.88	20.03
OQU80427	Sorghum	nucleus	19.0	18.76
EER99450	Sorghum	nucleus	15.91	17.99
EES07789	Sorghum	mitochondrion	16.86	17.25

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1Z5REK9	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:OQU81941	ProteinID:OQU81941	ProteinID:OQU81941.1
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF91	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	EnsemblPlantsGene:SORBI_3006G143200	SUPFAM:SSF52540	UniParc:UPI000B4258FD	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:-:50560817..50566988

Molecular Weight (calculated)

94357.6 Da

IEP (calculated)

9.812

GRAVY (calculated)

-0.783

Length

842 amino acids

Sequence
(BLAST)

001: MAESEHPPQV SSEPTTPPQE GSGRAKKKNK KNRSKKQPKR AAAAADTDGF SSGASTMVED PFLVLAGGKE GGFLDLEEID EADFGIFGNV LDDVGEGVKE
101: AGKDHGKKNK KKKTKKRKRG GDDEGFNADS ALVVENEQVD GEKAEKKVED GEKGEKKGKR KRNRKKRKVK DNETSRESDE DVASDNAEDM QDDTEKLEQD
201: KDDELILGED DVSEWRELRL HPLLLKAMRR LGFKEPTPIQ KSCFPAAAHQ GKDVIGAAET GSGKTLAFGL PILQRLLEER EKAARLHQEG DKMDERSGGS
301: PLRALILTPT RELAKQVCDH LKDAAKFLGI HVVPIVGGLS MEKQERLLKK KPEIVVGTPG RLWEHMSMNN QHLVELHSLS FFVLDEADRM IERGHFRELQ
401: SIIEMLPLTN GSDEQSAKTM PNCETVPNLQ IKKRQTFVFS ATLALSSNFR KKLKRGLSTS KASTPDDVSS IEALSKQAGM KPNAEIVDLT KASILPEKLE
501: ESFIECSEED KDAYLYYILS VHGQGRTIIF CTSIAALRHI SSILRILGIN VLTNHAQMQQ RARMKAVDRF RGSENSILVA TDGFARGMDF DDVRTVIHYQ
601: LPHSTDVYIH RSGRTARKSL AGCSIALISP TDKSKFYSLC KSLSKENLQQ FPIDHTYMSG VMNRLSLARQ IDKIARKTSQ ENANKSWLQR NAESMGLILD
701: ASDSEEERVQ GQKKRKGTSA HLQKLQQELS DLLQRPLQPK TFSRRYLAGA GVSPLLQKQL EELAKRKASN NSCKGSGFVV IGQDRVDPLQ ALQNSGQEVC
801: VNIDKQREKR RVAENWRRKK YEEKKRTREQ KRKDKRKAKE MA

Best Arabidopsis Sequence Match ( AT3G16840.1 )
(BLAST)

001: MVTGDKESSL MKKRNKRSHK RKREEDFERI DSLPWSSSIP IGEDDEGESF STLFSGSGQL DGGFLSLEEI DEADYHLTLP TIESEITERK QSPEDDDDTN
101: ETVDEMIEGE EAEEDGEGRD DEDDEDDEET RKKKEKKAKR NKEKKKEKKK KKQKKINEAA KNQDASAVSC DGDDTVEEQV EEEEIPPEFS AWSSMRLHPL
201: LMKSIYRLDF KEPTKIQKAC FNVAAYQGKD VIGAAETGSG KTLAFGLPIL QRLLDEREKV GKLYALKGEE AQKYAADGYL RALIITPTRE LALQVTEHLE
301: NAAKNLSVKV VPIVGGMFSE KQERRLKEKP EIVVATPGRL WELMSAGEKH LVELHSLSFF VLDEADRMVE RGHFRELQSI LDLLPVTDKP NEGKTQTVKS
401: NDTVLNVPKK KRQTFVFSAT IALSSDFRKK LKRGSSKSKQ SSSGEVNSIE VLSERAGMRD NVAIIDLTTT SILAPKIEES FIKCEEKEKD AYLYYILSVH
501: GQGRTIVFCT SVTDLRHISG LLKILGLDVC TLFSEMKQRA RLKSIDRFRA SENGILIATD LVARGIDIKN VRTIIHYKLP HSAEVYVHRC GRTARAFADG
601: CSIALIEPNE TSKFYTLCKS FSMESVKIFP LDNSYMPAVR KRLYLARQIY EIERKGSREN ADRTWLKKHA ESMELELDDE ESEEERVDNV RQRKATSARL
701: NKLKEELSTL LSHPMQPKKF SGRYFAGVGV STLMQNQFVE LKKQKQAQMQ IGGDIKRRKL VVINQNCIEP LQALRAGGNE MLKMKGQSAE KRRDIASLKK
801: KRKEEKIGRR DQRRNQKKQR KLMASS

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A178VJW0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.