Factsheet for VIT_05s0049g02360.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003801	Potato	nucleus	71.57	70.77
Solyc09g090740.2.1	Tomato	nucleus	71.19	70.21
KRH48208	Soybean	nucleus	71.19	69.26
Bra021205.1-P	Field mustard	mitochondrion, nucleus, plastid	53.81	67.41
KRH65117	Soybean	plastid	67.26	64.32
GSMUA_Achr5P10150_001	Banana	nucleus	60.53	61.95
CDY52719	Canola	nucleus, plastid	60.91	57.9
CDY34979	Canola	nucleus, plastid	60.53	57.33
TraesCS2B01G384300.1	Wheat	nucleus	60.53	57.13
AT3G16840.2	Thale cress	nucleus	59.9	57.07
TraesCS2D01G363700.1	Wheat	nucleus	60.41	56.94
OQU81941	Sorghum	nucleus	60.66	56.77
TraesCS2A01G366700.1	Wheat	nucleus	60.41	56.4
Os04t0510400-01	Rice	nucleus	59.26	56.13
Zm00001d003031_P002	Maize	nucleus	59.77	55.67
HORVU2Hr1G088480.2	Barley	nucleus, plastid	61.04	55.41
VIT_19s0085g00510.t01	Wine grape	cytosol	20.81	33.54
VIT_01s0010g01890.t01	Wine grape	nucleus	17.39	33.33
VIT_11s0065g01090.t01	Wine grape	cytosol	18.65	27.27
VIT_17s0000g04310.t01	Wine grape	cytosol	16.88	24.18
VIT_13s0067g01900.t01	Wine grape	nucleus	17.64	23.36
VIT_18s0001g14540.t01	Wine grape	nucleus	20.56	22.13
VIT_06s0004g07260.t01	Wine grape	extracellular, vacuole	4.44	21.88
VIT_11s0016g00630.t01	Wine grape	nucleus	16.12	21.17
VIT_15s0046g01010.t01	Wine grape	plastid	19.04	19.51
VIT_02s0025g03950.t01	Wine grape	mitochondrion	16.37	17.11

Protein Annotations

EntrezGene:100261404	wikigene:100261404	Gene3D:3.40.50.300	MapMan:35.1	ProteinID:CBI23744	ProteinID:CBI23744.3
ncoils:Coil	UniProt:D7SZR5	InterPro:DEAD/DEAH_box_helicase_dom	EMBL:FN595496	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EntrezGene:LOC100261404
wikigene:LOC100261404	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF91	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000198338C	ArrayExpress:VIT_05s0049g02360	EnsemblPlantsGene:VIT_05s0049g02360
EnsemblPlants:VIT_05s0049g02360.t01	unigene:Vvi.8482	RefSeq:XP_002282504	RefSeq:XP_002282504.1	SEG:seg	:

Description

No Description!

Coordinates

chr5:+:10088503..10130235

Molecular Weight (calculated)

88730.1 Da

IEP (calculated)

9.535

GRAVY (calculated)

-0.665

Length

788 amino acids

Sequence
(BLAST)

001: MAAKTPNARR KRTAVNPDLE RLESLPWNPS LPDVDDPFSL FVGSDELEGG FLSLEEIDES EYGLEIHEPG PEDKKGNPKQ SKKSKKRKSS GDNDSSGGGV
101: EDGTEEEVVD KKNFKKKKKK KKKVTKKNQT NEESATVSND KDDVEGDSVD EAEFYEWNEL RLHPLLMKSI HRLGFKQPTP IQKACIPAAA HQGKDVVGAS
201: ETGSGKTLAL GLPILQRLLE EREKAAEPLA ENSEEKYAEG GILRALIITP TRELALQVTD HLKEVAKGTN VRVVPIVGGM STEKQERLLK ARPEIVVGTP
301: GRLWELMSRG EDHLVELHSL SFFVLDEADR MVENGHFHEL QSIIDILPKT SGSMESLSQN TENCFTVSNI QRKKRQTFVF SATIALSADF RKKLKRGALR
401: SKQLMNDGLN SIETLSERAG MRPNAAIVDL TNASIMANKL EESFIECREE DKDAYLYYIL SVHGQGRTIV FCTSIAALRH TSSLLRILGI NVWTLHAQMQ
501: QRARLKAIDR FRGNEHGILV ATDVAARGLD IPGVRTVVHY QLPHSAEVYV HRSGRTARAS ADGCSIALIS PNDRSKFANL CKSFSKESFQ RFPIESSYMP
601: EVVKRLSLAR QIDKISRKDS QEKAKKSWFE QNAEALELIV DESDSEEEKV KIHKQKKASS MHLNKLQQEL NMLLSHPLQP KTFSHRFLAG AGVSPLLQRQ
701: FEELSKQKLD DGRSLGESKR RKLLVIGQEC VEPLQALRSA GQEVCMDVKE TAEKRRSLES LRRKRKEEKK QLRDQRRKQR KRLKADVE

Best Arabidopsis Sequence Match ( AT3G16840.2 )
(BLAST)

001: MVTGDKESSL MKKRNKRSHK RKREEDFERI DSLPWSSSIP IGEDDEGESF STLFSGSGQL DGGFLSLEEI DEADYHLTLP TIESEITERK QSPEDDDDTN
101: ETVDEMIEGE EAEEDGEGRD DEDDEDDEET RKKKEKKAKR NKEKKKEKKK KKQKKINEAA KNQDASAAVS CDGDDTVEEQ VEEEEIPPEF SAWSSMRLHP
201: LLMKSIYRLD FKEPTKIQKA CFNVAAYQGK DVIGAAETGS GKTLAFGLPI LQRLLDEREK VGKLYALKGE EAQKYAADGY LRALIITPTR ELALQVTEHL
301: ENAAKNLSVK VVPIVGGMFS EKQERRLKEK PEIVVATPGR LWELMSAGEK HLVELHSLSF FVLDEADRMV ERGHFRELQS ILDLLPVTDK PNEGKTQTVK
401: SNDTVLNVPK KKRQTFVFSA TIALSSDFRK KLKRGSSKSK QSSSGEVNSI EVLSERAGMR DNVAIIDLTT TSILAPKIEE SFIKCEEKEK DAYLYYILSV
501: HGQGRTIVFC TSVTDLRHIS GLLKILGLDV CTLFSEMKQR ARLKSIDRFR ASENGILIAT DLVARGIDIK NVRTIIHYKL PHSAEVYVHR CGRTARAFAD
601: GCSIALIEPN ETSKFYTLCK SFSMESVKIF PLDNSYMPAV RKRLYLARQI YEIERKGSRE NADRTWLKKH AESMELELDD EESEEERVDN VRQRKATSAR
701: LNKLKEELST LLSHPMQPKK FSGRYFAGVG VSTLMQNQFV ELKKQKQAQM QIGGDIKRRK LVVINQNCIE PLQALRAGGN EMLKMKGQSA EKRRDIASLK
801: KKRKEEKIGR RDQRRNQKKQ RKLMASS

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A178VJW0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.