Factsheet for VIT_17s0000g04310.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	74.36	79.11
PGSC0003DMT400063252	Potato	nucleus	78.91	76.68
Solyc03g114370.2.1	Tomato	nucleus	78.18	75.97
KRH62970	Soybean	nucleus	74.36	75.46
KRH03838	Soybean	nucleus	78.36	74.96
KRH56711	Soybean	nucleus	77.64	74.65
KRH54795	Soybean	nucleus	72.91	73.31
GSMUA_Achr7P07500_001	Banana	cytosol, nucleus, peroxisome	70.36	69.35
Bra022336.1-P	Field mustard	nucleus	66.18	64.08
CDX92251	Canola	nucleus	66.18	63.97
CDX99342	Canola	nucleus	65.64	63.56
Bra037574.1-P	Field mustard	nucleus	65.09	63.25
CDY18530	Canola	nucleus	65.09	63.03
CDX95512	Canola	nucleus	65.09	62.81
CDX82336	Canola	nucleus	65.27	62.65
TraesCS5A01G114200.1	Wheat	nucleus	65.82	62.41
AT3G18600.1	Thale cress	nucleus	64.36	62.32
CDX75974	Canola	nucleus	65.82	62.2
TraesCS5B01G120400.1	Wheat	nucleus	65.45	62.07
TraesCS5D01G127000.1	Wheat	nucleus	65.45	62.07
HORVU4Hr1G000640.1	Barley	cytosol, nucleus	56.0	61.97
Os03t0802700-01	Rice	nucleus	65.64	61.19
Bra001713.1-P	Field mustard	nucleus	65.45	59.41
TraesCS6D01G292400.1	Wheat	nucleus	59.27	58.95
EER90714	Sorghum	nucleus	66.55	58.75
CDY36514	Canola	nucleus	62.18	58.66
TraesCS6A01G312900.1	Wheat	nucleus	58.91	58.59
TraesCS5A01G042300.1	Wheat	nucleus	60.91	58.16
TraesCS6B01G342900.1	Wheat	nucleus	57.64	58.06
Bra024428.1-P	Field mustard	nucleus	62.36	58.04
Os06t0535100-00	Rice	nucleus	61.27	57.9
CDY08740	Canola	nucleus	62.36	57.74
TraesCS5D01G050600.1	Wheat	nucleus	57.64	56.71
TraesCS6A01G356000.1	Wheat	nucleus	58.73	56.37
Zm00001d023501_P001	Maize	nucleus	60.18	54.89
OQU76528	Sorghum	nucleus	59.64	54.76
Zm00001d013056_P001	Maize	nucleus	65.27	54.73
HORVU5Hr1G010160.3	Barley	cytosol	59.09	53.99
AT5G65900.1	Thale cress	nucleus	60.55	52.61
TraesCS7B01G213800.1	Wheat	nucleus	29.45	52.43
TraesCS7A01G313300.1	Wheat	nucleus	29.27	52.1
TraesCS7D01G309800.1	Wheat	nucleus	29.45	51.92
Zm00001d000431_P001	Maize	plastid	45.64	51.65
KXG37786	Sorghum	nucleus	41.82	50.77
VIT_11s0016g00630.t01	Wine grape	nucleus	35.45	32.5
VIT_01s0010g01890.t01	Wine grape	nucleus	24.18	32.36
VIT_11s0065g01090.t01	Wine grape	cytosol	27.45	28.01
VIT_19s0085g00510.t01	Wine grape	cytosol	24.73	27.81
VIT_13s0067g01900.t01	Wine grape	nucleus	29.09	26.89
VIT_06s0004g07260.t01	Wine grape	extracellular, vacuole	6.91	23.75
VIT_15s0046g01010.t01	Wine grape	plastid	30.18	21.59
VIT_02s0025g03950.t01	Wine grape	mitochondrion	27.27	19.89
VIT_18s0001g14540.t01	Wine grape	nucleus	25.82	19.4
VIT_05s0049g02360.t01	Wine grape	nucleus	24.18	16.88

Protein Annotations

EntrezGene:100242258	wikigene:100242258	Gene3D:3.40.50.300	MapMan:35.1	ProteinID:CCB43186	ProteinID:CCB43186.1
ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	UniProt:F6GTH7	EMBL:FN594950	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	EntrezGene:LOC100242258	wikigene:LOC100242258	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFAM:PF13959	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF305	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SMART:SM01178
SUPFAM:SSF52540	TIGR:TC58108	UniParc:UPI00015C9D1E	ArrayExpress:VIT_17s0000g04310	EnsemblPlantsGene:VIT_17s0000g04310	EnsemblPlants:VIT_17s0000g04310.t01
unigene:Vvi.11866	RefSeq:XP_002275026	RefSeq:XP_002275026.1	SEG:seg	:	:

Description

RNA helicase [Source:UniProtKB/TrEMBL;Acc:F6GTH7]

Coordinates

chr17:-:4528760..4537633

Molecular Weight (calculated)

61772.1 Da

IEP (calculated)

8.998

GRAVY (calculated)

-0.443

Length

550 amino acids

Sequence
(BLAST)

001: MPKESEPAPS DTANNDEDST PEEEEAVAED REEEVAEERE AVESLKEKKK AKKSGSGIMS TEAFSALGLS EPTMKAINDM GFGNMTQIQA RAIPPLLLGK
101: DVLGAARTGS GKTLAFLIPA VELLYHISFM PRNGTGVVVI CPTRELAIQT HAVAKDLLKY HTQTLGLVIG GSARRGEAER LAKGANLLVA TPGRLLDHLQ
201: NTKGFIYKNL KCLIIDEADR ILEANFEEEM KQIIKLLPKE RQTALFSATQ TKKVEDLARL SFQTTPVYID VDDGRTKVTN EGLQQGYCVV PSAKRFVLLY
301: SFLKRNLSKK VMVFFSSCNS VKYHSELLRY IQVDCLDIHG KQKQQKRTST FFDFCKAEKG ILLCTDVAAR GLDIPDVDWI VQYDPPDEPK EYIHRVGRTA
401: RGEGKKGNAL LFLIPEELQF LRYLKAAKVP VKEYEYDVKK LANVQSHLEK LVSNNYYLNK SAKDAYRSYI LAYNSHSMKD IFNVHRLDLQ AVASSFCFSS
501: PPKVNLSIDS SASKFRKKTH KVEGSRNGFS ESNPYGRQRG QDDKRQFVRY

Best Arabidopsis Sequence Match ( AT3G18600.1 )
(BLAST)

001: MVESDKSSVE ELKKRVRKRS RGKKNEQQKA EEKTHTVEEN ADETQKKSEK KVKKVRGKIE EEEEKVEAME DGEDEKNIVI VGKGIMTNVT FDSLDLSEQT
101: SIAIKEMGFQ YMTQIQAGSI QPLLEGKDVL GAARTGSGKT LAFLIPAVEL LFKERFSPRN GTGVIVICPT RELAIQTKNV AEELLKHHSQ TVSMVIGGNN
201: RRSEAQRIAS GSNLVIATPG RLLDHLQNTK AFIYKHLKCL VIDEADRILE ENFEEDMNKI LKILPKTRQT ALFSATQTSK VKDLARVSLT SPVHVDVDDG
301: RRKVTNEGLE QGYCVVPSKQ RLILLISFLK KNLNKKIMVF FSTCKSVQFH TEIMKISDVD VSDIHGGMDQ NRRTKTFFDF MKAKKGILLC TDVAARGLDI
401: PSVDWIIQYD PPDKPTEYIH RVGRTARGEG AKGKALLVLI PEELQFIRYL KAAKVPVKEL EFNEKRLSNV QSALEKCVAK DYNLNKLAKD AYRAYLSAYN
501: SHSLKDIFNV HRLDLLAVAE SFCFSSPPKV NLNIESGAGK VRKARKQQGR NGFSPYSPYG KSTPTKEA

Arabidopsis Description

RH51DEAD-box ATP-dependent RNA helicase 51 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIH9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.