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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 21132161
endoplasmic reticulum: 23041469
nucleus: 27291164
endoplasmic reticulum: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 23041469 doi
S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa
National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH54795 Soybean nucleus 95.2 94.33
VIT_17s0000g04310.t01 Wine grape cytosol 75.46 74.36
KRH56711 Soybean nucleus 77.68 73.6
KRH03838 Soybean nucleus 78.04 73.57
GSMUA_Achr10P... Banana cytosol 67.53 70.79
PGSC0003DMT400063252 Potato nucleus 73.43 70.32
Solyc03g114370.2.1 Tomato nucleus 72.88 69.79
Bra022336.1-P Field mustard nucleus 64.58 61.62
CDX92251 Canola nucleus 64.58 61.51
HORVU4Hr1G000640.1 Barley cytosol, nucleus 56.27 61.37
GSMUA_Achr7P07500_001 Banana cytosol, nucleus, peroxisome 63.1 61.29
CDX99342 Canola nucleus 64.21 61.27
AT3G18600.1 Thale cress nucleus 64.21 61.27
CDX82336 Canola nucleus 64.39 60.91
CDX95512 Canola nucleus 64.02 60.88
Bra037574.1-P Field mustard nucleus 63.47 60.78
CDY18530 Canola nucleus 63.47 60.56
CDX75974 Canola nucleus 64.39 59.97
TraesCS5A01G114200.1 Wheat nucleus 63.47 59.31
TraesCS5B01G120400.1 Wheat nucleus 63.47 59.31
TraesCS5D01G127000.1 Wheat nucleus 63.28 59.14
Os03t0802700-01 Rice nucleus 62.73 57.63
Bra001713.1-P Field mustard nucleus 63.84 57.1
TraesCS6D01G292400.1 Wheat nucleus 57.93 56.78
CDY36514 Canola nucleus 61.07 56.78
EER90714 Sorghum nucleus 64.94 56.5
TraesCS6A01G312900.1 Wheat nucleus 57.56 56.42
Bra024428.1-P Field mustard nucleus 61.44 56.35
CDY08740 Canola nucleus 61.44 56.06
TraesCS6B01G342900.1 Wheat nucleus 56.09 55.68
TraesCS5A01G042300.1 Wheat nucleus 58.49 55.03
TraesCS6A01G356000.1 Wheat nucleus 57.93 54.8
TraesCS5D01G050600.1 Wheat nucleus 55.9 54.2
Os06t0535100-00 Rice nucleus 57.93 53.95
OQU76528 Sorghum nucleus 58.3 52.75
Zm00001d013056_P001 Maize nucleus 63.65 52.59
TraesCS7A01G313300.1 Wheat nucleus 29.89 52.43
TraesCS7B01G213800.1 Wheat nucleus 29.89 52.43
HORVU5Hr1G010160.3 Barley cytosol 57.75 51.99
Zm00001d000431_P001 Maize plastid 46.49 51.85
AT5G65900.1 Thale cress nucleus 60.33 51.66
TraesCS7D01G309800.1 Wheat nucleus 29.7 51.6
Zm00001d023501_P001 Maize nucleus 57.38 51.58
KXG37786 Sorghum nucleus 41.51 49.67
KRH65120 Soybean cytosol 27.49 33.94
KRH48210 Soybean nucleus 19.19 32.5
KRH37539 Soybean nucleus 32.1 32.28
KRH12590 Soybean nucleus 31.37 31.31
KRG97683 Soybean nucleus 29.34 26.99
KRH73730 Soybean nucleus 36.16 26.27
KRH37970 Soybean cytosol 15.31 25.94
KRH14417 Soybean cytosol, nucleus 23.8 24.43
KRH31184 Soybean nucleus 28.97 23.61
KRH47920 Soybean nucleus 29.52 22.76
KRH13749 Soybean cytosol, plastid 23.99 22.0
KRH43700 Soybean cytosol 23.62 21.84
KRH41139 Soybean nucleus 28.04 21.5
KRH06491 Soybean nucleus 29.89 20.1
KRH37947 Soybean plastid 20.3 18.68
KRH46113 Soybean nucleus 25.46 18.23
KRH64859 Soybean nucleus 26.01 18.15
KRG98832 Soybean nucleus 25.28 18.05
KRH09570 Soybean nucleus 25.83 18.02
KRH59841 Soybean nucleus 17.34 17.77
KRH54980 Soybean nucleus 5.72 17.42
KRH48208 Soybean nucleus 23.62 15.8
KRH65117 Soybean plastid 22.51 14.81
Protein Annotations
EntrezGene:100798290Gene3D:3.40.50.300MapMan:35.1EMBL:ACUP02002468ncoils:CoilInterPro:DEAD/DEAH_box_helicase_dom
InterPro:DUF4217EnsemblPlantsGene:GLYMA_04G145400GO:GO:0000166GO:GO:0003674GO:GO:0003676GO:GO:0003723
GO:GO:0003824GO:GO:0004004GO:GO:0004386GO:GO:0005488GO:GO:0005524GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005730GO:GO:0005737GO:GO:0006139
GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0010501GO:GO:0016787InterPro:Helicase_ATP-bd
InterPro:Helicase_CUniProt:I1N1P3InterPro:IPR001650InterPro:IPR014001InterPro:IPR014014EnsemblPlants:KRH62970
ProteinID:KRH62970ProteinID:KRH62970.1InterPro:P-loop_NTPasePFAM:PF00270PFAM:PF00271PFAM:PF13959
ScanProsite:PS00039PFscan:PS51192PFscan:PS51194PFscan:PS51195PANTHER:PTHR24031PANTHER:PTHR24031:SF305
InterPro:RNA-helicase_DEAD-box_CSInterPro:RNA_helicase_DEAD_Q_motifSMART:SM00487SMART:SM00490SMART:SM01178SUPFAM:SSF52540
UniParc:UPI000233EB26SEG:seg::::
Description
hypothetical protein
Coordinates
chr4:+:26681711..26687532
Molecular Weight (calculated)
61051.6 Da
IEP (calculated)
9.779
GRAVY (calculated)
-0.459
Length
542 amino acids
Sequence
(BLAST)
001: MAEAEHNDPT SPEREVQTKS NKKKLRKRKR PHKTEQKRDE DKNDANIDSA QTQTEDEEEE QKEEDTNNFS SGIMSTESFS SLGLSEPTSK AIADMGFHRM
101: TQIQAKAIPP LLTRKDVLGA ARTGAGKTLA FLVPAVELLY SIQFTPRNGT GVVVICPTRE LAIQTHAVAK ELLKYHSQTL GLVIGGSGRK GEAERIVKGV
201: NLLVATPGRL LDHLQNTKGF IYKNLKCLMI DEADRILEAN FEEEMKQIIN ILPKKRQTAL FSATQTKKVE DLARLSFQAT PIYIDVDDGR KKVTNEGLQQ
301: GYVVVPCAKR FVVLYSFLRR YQSKKVMVFF SSCNSVKFHA DLLKCTGLDC LNIHGKQKQH ARTTTFFNFC KAEKGILLCT DVAARGLDIP DVDWIVQYDP
401: PDEPKEYIHR VGRTARGEGG KGNALLFLIP EELQFLHYLK AAKVPVKEYA FDHKKLANVQ SQLEKLVAGI YHLNVMAKDA YRSYILAYNS HSMKDIFNVH
501: RLDLQAVAAS FCFSNPPKVN LNIDSSASKH RKKIRKVEGK RR
Best Arabidopsis Sequence Match ( AT3G18600.1 )
(BLAST)
001: MVESDKSSVE ELKKRVRKRS RGKKNEQQKA EEKTHTVEEN ADETQKKSEK KVKKVRGKIE EEEEKVEAME DGEDEKNIVI VGKGIMTNVT FDSLDLSEQT
101: SIAIKEMGFQ YMTQIQAGSI QPLLEGKDVL GAARTGSGKT LAFLIPAVEL LFKERFSPRN GTGVIVICPT RELAIQTKNV AEELLKHHSQ TVSMVIGGNN
201: RRSEAQRIAS GSNLVIATPG RLLDHLQNTK AFIYKHLKCL VIDEADRILE ENFEEDMNKI LKILPKTRQT ALFSATQTSK VKDLARVSLT SPVHVDVDDG
301: RRKVTNEGLE QGYCVVPSKQ RLILLISFLK KNLNKKIMVF FSTCKSVQFH TEIMKISDVD VSDIHGGMDQ NRRTKTFFDF MKAKKGILLC TDVAARGLDI
401: PSVDWIIQYD PPDKPTEYIH RVGRTARGEG AKGKALLVLI PEELQFIRYL KAAKVPVKEL EFNEKRLSNV QSALEKCVAK DYNLNKLAKD AYRAYLSAYN
501: SHSLKDIFNV HRLDLLAVAE SFCFSSPPKV NLNIESGAGK VRKARKQQGR NGFSPYSPYG KSTPTKEA
Arabidopsis Description
RH51DEAD-box ATP-dependent RNA helicase 51 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIH9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.