Factsheet for Solyc03g114370.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063252	Potato	nucleus	96.64	96.64
VIT_17s0000g04310.t01	Wine grape	cytosol	75.97	78.18
GSMUA_Achr10P...	Banana	cytosol	68.55	75.05
KRH03838	Soybean	nucleus	74.38	73.22
KRH56711	Soybean	nucleus	73.85	73.08
KRH62970	Soybean	nucleus	69.79	72.88
KRH54795	Soybean	nucleus	69.43	71.85
Bra022336.1-P	Field mustard	nucleus	65.9	65.67
GSMUA_Achr7P07500_001	Banana	cytosol, nucleus, peroxisome	64.66	65.59
CDX92251	Canola	nucleus	65.72	65.38
AT3G18600.1	Thale cress	nucleus	65.37	65.14
CDX99342	Canola	nucleus	65.37	65.14
CDX82336	Canola	nucleus	65.9	65.1
Bra037574.1-P	Field mustard	nucleus	64.84	64.84
CDY18530	Canola	nucleus	64.84	64.61
CDX95512	Canola	nucleus	64.84	64.39
CDX75974	Canola	nucleus	65.9	64.09
HORVU4Hr1G000640.1	Barley	cytosol, nucleus	54.06	61.57
Bra001713.1-P	Field mustard	nucleus	65.9	61.55
TraesCS5A01G114200.1	Wheat	nucleus	62.72	61.21
TraesCS5D01G127000.1	Wheat	nucleus	62.72	61.21
TraesCS5B01G120400.1	Wheat	nucleus	62.54	61.03
TraesCS6D01G292400.1	Wheat	nucleus	57.95	59.31
Os03t0802700-01	Rice	nucleus	61.66	59.15
TraesCS6A01G312900.1	Wheat	nucleus	57.42	58.77
TraesCS5A01G042300.1	Wheat	nucleus	59.01	57.99
CDY36514	Canola	nucleus	59.72	57.98
TraesCS6B01G342900.1	Wheat	nucleus	55.83	57.88
EER90714	Sorghum	nucleus	63.6	57.78
Bra024428.1-P	Field mustard	nucleus	60.25	57.7
CDY08740	Canola	nucleus	60.25	57.41
TraesCS6A01G356000.1	Wheat	nucleus	57.6	56.89
TraesCS5D01G050600.1	Wheat	nucleus	55.48	56.17
Os06t0535100-00	Rice	nucleus	57.24	55.67
OQU76528	Sorghum	nucleus	58.48	55.26
Zm00001d023501_P001	Maize	nucleus	58.3	54.73
Zm00001d013056_P001	Maize	nucleus	63.07	54.42
HORVU5Hr1G010160.3	Barley	cytosol	57.77	54.32
Zm00001d000431_P001	Maize	plastid	46.29	53.91
AT5G65900.1	Thale cress	nucleus	58.66	52.45
KXG37786	Sorghum	nucleus	41.87	52.32
TraesCS7B01G213800.1	Wheat	nucleus	28.45	52.1
TraesCS7D01G309800.1	Wheat	nucleus	28.45	51.6
TraesCS7A01G313300.1	Wheat	nucleus	28.09	51.46
Solyc10g007550.2.1	Tomato	cytosol, nucleus	25.8	33.26
Solyc07g042270.2.1	Tomato	nucleus	31.1	29.48
Solyc10g005520.2.1	Tomato	cytosol	23.5	27.25
Solyc07g064520.2.1	Tomato	nucleus	34.63	25.99
Solyc02g078880.2.1	Tomato	nucleus	26.86	25.59
Solyc12g056340.1.1	Tomato	cytosol, nucleus, plastid	27.56	19.38
Solyc04g081580.2.1	Tomato	nucleus	25.27	19.22
Solyc01g095740.2.1	Tomato	nucleus	28.98	18.85
Solyc10g009070.2.1	Tomato	nucleus	25.27	18.22
Solyc09g090740.2.1	Tomato	nucleus	23.67	16.77

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	UniProt:K4BKT9	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF13959
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF305
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SMART:SM01178	SUPFAM:SSF52540
EnsemblPlantsGene:Solyc03g114370.2	EnsemblPlants:Solyc03g114370.2.1	UniParc:UPI00027681D4	SEG:seg	:	:

Description

RNA helicase [Source:UniProtKB/TrEMBL;Acc:K4BKT9]

Coordinates

chr3:-:64372152..64379297

Molecular Weight (calculated)

64396.4 Da

IEP (calculated)

9.229

GRAVY (calculated)

-0.527

Length

566 amino acids

Sequence
(BLAST)

001: MAEVEENPNI VIAEEESIKK KRKRKRDKKN KMVTEKETKE EEEKEEGEED DEERQELGDE LKEEIKKEMK SGSGIMSSEL FSSVQISELT RKAIEDMGFE
101: YMTQIQARAI PPLVEGKDVL GAARTGSGKT LAFLVPAVEL LFNVHFTPRN GTGVVVICPT RELAIQTHAV AKDLLKYHSQ TLGLVIGGSA RRAEAERIAK
201: GANLLVGTPG RLLDHLRNTK GFNYKNLQCL VIDEADRILE ANFEEDMQQI LKLLPKEGRQ TALFSATQTK KVEDLARLSL TAPIYIDVDD GRRRVTNEGL
301: QQGYCVVPSA RRFILLYSFL KRNLSKKIMV FFSSCNSVKF HSELLRYIKI ECHDIHGKQK QQKRTSTFFD FCEAKKGILL CTDVAARGLD IPAVDWIVQF
401: DPPDEPKEYI HRVGRTARGE GAKGNALLFL IPEELQFLKY LKAAKVPVKE YEFDHKKLAN VQSLLEKLVA NNYYLNQSAK EAYRSYLLSY NSHSMKEIFN
501: VHRLDLQAVA SSFCFSNPPK VHLNIDSNAS KFRQKKRKVE GSRNGFSEGN PYGKKRADDT RQFVRY

Best Arabidopsis Sequence Match ( AT3G18600.1 )
(BLAST)

001: MVESDKSSVE ELKKRVRKRS RGKKNEQQKA EEKTHTVEEN ADETQKKSEK KVKKVRGKIE EEEEKVEAME DGEDEKNIVI VGKGIMTNVT FDSLDLSEQT
101: SIAIKEMGFQ YMTQIQAGSI QPLLEGKDVL GAARTGSGKT LAFLIPAVEL LFKERFSPRN GTGVIVICPT RELAIQTKNV AEELLKHHSQ TVSMVIGGNN
201: RRSEAQRIAS GSNLVIATPG RLLDHLQNTK AFIYKHLKCL VIDEADRILE ENFEEDMNKI LKILPKTRQT ALFSATQTSK VKDLARVSLT SPVHVDVDDG
301: RRKVTNEGLE QGYCVVPSKQ RLILLISFLK KNLNKKIMVF FSTCKSVQFH TEIMKISDVD VSDIHGGMDQ NRRTKTFFDF MKAKKGILLC TDVAARGLDI
401: PSVDWIIQYD PPDKPTEYIH RVGRTARGEG AKGKALLVLI PEELQFIRYL KAAKVPVKEL EFNEKRLSNV QSALEKCVAK DYNLNKLAKD AYRAYLSAYN
501: SHSLKDIFNV HRLDLLAVAE SFCFSSPPKV NLNIESGAGK VRKARKQQGR NGFSPYSPYG KSTPTKEA

Arabidopsis Description

RH51DEAD-box ATP-dependent RNA helicase 51 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIH9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.