Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037574.1-P | Field mustard | nucleus | 99.65 | 100.0 |
| CDX95512 | Canola | nucleus | 96.13 | 95.79 |
| CDX82336 | Canola | nucleus | 93.66 | 92.84 |
| CDX92251 | Canola | nucleus | 92.78 | 92.62 |
| CDX99342 | Canola | nucleus | 92.25 | 92.25 |
| CDX75974 | Canola | nucleus | 92.08 | 89.86 |
| AT3G18600.1 | Thale cress | nucleus | 85.21 | 85.21 |
| PGSC0003DMT400063252 | Potato | nucleus | 65.32 | 65.55 |
| VIT_17s0000g04310.t01 | Wine grape | cytosol | 63.03 | 65.09 |
| Solyc03g114370.2.1 | Tomato | nucleus | 64.61 | 64.84 |
| GSMUA_Achr10P... | Banana | cytosol | 58.45 | 64.22 |
| KRH62970 | Soybean | nucleus | 60.56 | 63.47 |
| KRH03838 | Soybean | nucleus | 63.56 | 62.78 |
| KRH56711 | Soybean | nucleus | 62.85 | 62.41 |
| KRH54795 | Soybean | nucleus | 60.04 | 62.34 |
| CDY36514 | Canola | nucleus | 60.74 | 59.18 |
| CDY08740 | Canola | nucleus | 60.92 | 58.25 |
| HORVU4Hr1G000640.1 | Barley | cytosol, nucleus | 49.47 | 56.54 |
| GSMUA_Achr7P07500_001 | Banana | cytosol, nucleus, peroxisome | 54.75 | 55.73 |
| TraesCS5A01G114200.1 | Wheat | nucleus | 56.16 | 55.0 |
| TraesCS6D01G292400.1 | Wheat | nucleus | 53.52 | 54.97 |
| TraesCS5B01G120400.1 | Wheat | nucleus | 55.99 | 54.83 |
| TraesCS5D01G127000.1 | Wheat | nucleus | 55.99 | 54.83 |
| TraesCS6A01G312900.1 | Wheat | nucleus | 53.17 | 54.61 |
| TraesCS6B01G342900.1 | Wheat | nucleus | 52.11 | 54.21 |
| EER90714 | Sorghum | nucleus | 59.33 | 54.09 |
| TraesCS5A01G042300.1 | Wheat | nucleus | 53.87 | 53.12 |
| Os03t0802700-01 | Rice | nucleus | 54.93 | 52.88 |
| TraesCS5D01G050600.1 | Wheat | nucleus | 50.88 | 51.7 |
| TraesCS6A01G356000.1 | Wheat | nucleus | 52.11 | 51.66 |
| OQU76528 | Sorghum | nucleus | 54.4 | 51.59 |
| Os06t0535100-00 | Rice | nucleus | 52.29 | 51.03 |
| KXG37786 | Sorghum | nucleus | 40.14 | 50.33 |
| HORVU5Hr1G010160.3 | Barley | cytosol | 52.99 | 50.0 |
| Zm00001d000431_P001 | Maize | plastid | 42.78 | 50.0 |
| Zm00001d013056_P001 | Maize | nucleus | 57.75 | 50.0 |
| Zm00001d023501_P001 | Maize | nucleus | 52.29 | 49.25 |
| TraesCS7A01G313300.1 | Wheat | nucleus | 24.47 | 44.98 |
| TraesCS7B01G213800.1 | Wheat | nucleus | 24.47 | 44.98 |
| TraesCS7D01G309800.1 | Wheat | nucleus | 24.3 | 44.23 |
| CDY42845 | Canola | cytosol | 26.41 | 33.41 |
| CDY47007 | Canola | cytosol | 26.23 | 33.18 |
| CDX81759 | Canola | cytosol | 24.65 | 28.69 |
| CDY52844 | Canola | cytosol | 24.47 | 28.54 |
| CDX96202 | Canola | cytosol | 13.73 | 28.06 |
| CDY17287 | Canola | nucleus | 32.22 | 27.98 |
| CDY40740 | Canola | cytosol | 26.06 | 27.36 |
| CDX79974 | Canola | nucleus | 31.87 | 26.31 |
| CDY14112 | Canola | cytosol | 27.46 | 26.26 |
| CDY04952 | Canola | nucleus | 27.46 | 26.26 |
| CDX70149 | Canola | nucleus | 27.64 | 26.25 |
| CDY44780 | Canola | mitochondrion | 26.58 | 26.12 |
| CDY23886 | Canola | plasma membrane | 31.69 | 25.68 |
| CDY41525 | Canola | mitochondrion | 26.41 | 21.1 |
| CDX84428 | Canola | mitochondrion | 26.23 | 21.07 |
| CDY49890 | Canola | mitochondrion | 25.35 | 18.46 |
| CDY45370 | Canola | mitochondrion | 25.35 | 18.41 |
| CDY40519 | Canola | nucleus | 23.94 | 17.94 |
| CDX69933 | Canola | cytosol | 4.23 | 17.65 |
| CDX79187 | Canola | cytosol | 25.0 | 16.75 |
| CDX68066 | Canola | cytosol | 25.0 | 16.67 |
| CDY50846 | Canola | nucleus | 24.3 | 16.45 |
| CDY53643 | Canola | nucleus | 24.3 | 16.35 |
| CDY52719 | Canola | nucleus, plastid | 23.42 | 16.04 |
| CDY34979 | Canola | nucleus, plastid | 23.24 | 15.87 |
| CDY32273 | Canola | nucleus | 22.18 | 13.8 |
| CDY21554 | Canola | mitochondrion | 26.76 | 11.18 |
| CDX69935 | Canola | mitochondrion | 26.94 | 11.1 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078FVV5 | UniProt:A0A078FVV5 | EnsemblPlants:CDY18530 | ProteinID:CDY18530 |
| ProteinID:CDY18530.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF4217 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00005556001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF13959 | ScanProsite:PS00039 |
| PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF305 | InterPro:RNA-helicase_DEAD-box_CS |
| InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SMART:SM01178 | SUPFAM:SSF52540 | UniParc:UPI0004EECF60 |
| SEG:seg | : | : | : | : | : |
Description
BnaA01g26650DRNA helicase [Source:UniProtKB/TrEMBL;Acc:A0A078FVV5]
Coordinates
chrLK032086:-:329550..333284
Molecular Weight (calculated)
63980.6 Da
IEP (calculated)
9.806
GRAVY (calculated)
-0.419
Length
568 amino acids
Sequence
(BLAST)
(BLAST)
001: MVELEKNSSG ELKKRIRKRN RGKKNELQKV QVETHNVEEN ADEIKKKLKK VKKLQERGET DEDVEAKEKE EEVEDKMVVV AKGIMTNETF ESLDLSEQTF
101: EAIKAMDFKH MTQIQAGSIP PLLEGKDVLG AARTGSGKTL AFLIPAVELL FKERFSPRNG TGVIVICPTR ELAIQTKNVA EELVKHHSLT VSMVIGGNNR
201: RSEAQRLANG SNLLIATPGR LLDHLQHTKG FIFKHLKCLV IDEADRILEE NFEEDMNKIL KILPKTRQTA LFSATQTSKV QDLARVSLTS PVLVDVDDGR
301: RKVTNEGLEQ GYCVVPSEKR LLLLISFLKK NLNKKIMVFF STCKSVQFHA EIMKLINVDS CDIHGGLDQN RRTKTFFDFM KAEKGILLCT DVAARGLDIP
401: AVDWIIQYDP PDKPTEYIHR VGRTARGEGA KGKALLVLIP EELQFIRYLK AAKVPVKELE FNEKKLLNVR SALEKYVAND YNLNKIAKEA YRAYIAAYNS
501: HSLKDIFNVH RLDLQAVALS FCFSSPPKVH LNIESGAGKV RKARNQQGRN GFSPYTPYGK GKATPKEA
101: EAIKAMDFKH MTQIQAGSIP PLLEGKDVLG AARTGSGKTL AFLIPAVELL FKERFSPRNG TGVIVICPTR ELAIQTKNVA EELVKHHSLT VSMVIGGNNR
201: RSEAQRLANG SNLLIATPGR LLDHLQHTKG FIFKHLKCLV IDEADRILEE NFEEDMNKIL KILPKTRQTA LFSATQTSKV QDLARVSLTS PVLVDVDDGR
301: RKVTNEGLEQ GYCVVPSEKR LLLLISFLKK NLNKKIMVFF STCKSVQFHA EIMKLINVDS CDIHGGLDQN RRTKTFFDFM KAEKGILLCT DVAARGLDIP
401: AVDWIIQYDP PDKPTEYIHR VGRTARGEGA KGKALLVLIP EELQFIRYLK AAKVPVKELE FNEKKLLNVR SALEKYVAND YNLNKIAKEA YRAYIAAYNS
501: HSLKDIFNVH RLDLQAVALS FCFSSPPKVH LNIESGAGKV RKARNQQGRN GFSPYTPYGK GKATPKEA
001: MVESDKSSVE ELKKRVRKRS RGKKNEQQKA EEKTHTVEEN ADETQKKSEK KVKKVRGKIE EEEEKVEAME DGEDEKNIVI VGKGIMTNVT FDSLDLSEQT
101: SIAIKEMGFQ YMTQIQAGSI QPLLEGKDVL GAARTGSGKT LAFLIPAVEL LFKERFSPRN GTGVIVICPT RELAIQTKNV AEELLKHHSQ TVSMVIGGNN
201: RRSEAQRIAS GSNLVIATPG RLLDHLQNTK AFIYKHLKCL VIDEADRILE ENFEEDMNKI LKILPKTRQT ALFSATQTSK VKDLARVSLT SPVHVDVDDG
301: RRKVTNEGLE QGYCVVPSKQ RLILLISFLK KNLNKKIMVF FSTCKSVQFH TEIMKISDVD VSDIHGGMDQ NRRTKTFFDF MKAKKGILLC TDVAARGLDI
401: PSVDWIIQYD PPDKPTEYIH RVGRTARGEG AKGKALLVLI PEELQFIRYL KAAKVPVKEL EFNEKRLSNV QSALEKCVAK DYNLNKLAKD AYRAYLSAYN
501: SHSLKDIFNV HRLDLLAVAE SFCFSSPPKV NLNIESGAGK VRKARKQQGR NGFSPYSPYG KSTPTKEA
101: SIAIKEMGFQ YMTQIQAGSI QPLLEGKDVL GAARTGSGKT LAFLIPAVEL LFKERFSPRN GTGVIVICPT RELAIQTKNV AEELLKHHSQ TVSMVIGGNN
201: RRSEAQRIAS GSNLVIATPG RLLDHLQNTK AFIYKHLKCL VIDEADRILE ENFEEDMNKI LKILPKTRQT ALFSATQTSK VKDLARVSLT SPVHVDVDDG
301: RRKVTNEGLE QGYCVVPSKQ RLILLISFLK KNLNKKIMVF FSTCKSVQFH TEIMKISDVD VSDIHGGMDQ NRRTKTFFDF MKAKKGILLC TDVAARGLDI
401: PSVDWIIQYD PPDKPTEYIH RVGRTARGEG AKGKALLVLI PEELQFIRYL KAAKVPVKEL EFNEKRLSNV QSALEKCVAK DYNLNKLAKD AYRAYLSAYN
501: SHSLKDIFNV HRLDLLAVAE SFCFSSPPKV NLNIESGAGK VRKARKQQGR NGFSPYSPYG KSTPTKEA
Arabidopsis Description
RH51DEAD-box ATP-dependent RNA helicase 51 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIH9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.