Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75974 | Canola | nucleus | 96.51 | 95.02 |
| CDX92251 | Canola | nucleus | 93.54 | 94.2 |
| CDX95512 | Canola | nucleus | 93.54 | 94.04 |
| CDX99342 | Canola | nucleus | 93.02 | 93.84 |
| CDY18530 | Canola | nucleus | 92.84 | 93.66 |
| Bra001713.1-P | Field mustard | nucleus | 97.03 | 91.75 |
| AT3G18600.1 | Thale cress | nucleus | 85.69 | 86.44 |
| PGSC0003DMT400063252 | Potato | nucleus | 65.97 | 66.78 |
| Solyc03g114370.2.1 | Tomato | nucleus | 65.1 | 65.9 |
| VIT_17s0000g04310.t01 | Wine grape | cytosol | 62.65 | 65.27 |
| KRH62970 | Soybean | nucleus | 60.91 | 64.39 |
| GSMUA_Achr10P... | Banana | cytosol | 57.94 | 64.22 |
| KRH03838 | Soybean | nucleus | 63.35 | 63.13 |
| KRH54795 | Soybean | nucleus | 60.03 | 62.89 |
| KRH56711 | Soybean | nucleus | 62.48 | 62.59 |
| CDY36514 | Canola | nucleus | 60.21 | 59.18 |
| CDY08740 | Canola | nucleus | 60.38 | 58.25 |
| HORVU4Hr1G000640.1 | Barley | cytosol, nucleus | 49.04 | 56.54 |
| GSMUA_Achr7P07500_001 | Banana | cytosol, nucleus, peroxisome | 54.1 | 55.56 |
| TraesCS5A01G114200.1 | Wheat | nucleus | 56.02 | 55.34 |
| TraesCS5B01G120400.1 | Wheat | nucleus | 56.02 | 55.34 |
| TraesCS5D01G127000.1 | Wheat | nucleus | 56.02 | 55.34 |
| TraesCS6D01G292400.1 | Wheat | nucleus | 52.88 | 54.79 |
| TraesCS6A01G312900.1 | Wheat | nucleus | 52.53 | 54.43 |
| EER90714 | Sorghum | nucleus | 58.81 | 54.09 |
| Os03t0802700-01 | Rice | nucleus | 55.5 | 53.9 |
| TraesCS6B01G342900.1 | Wheat | nucleus | 51.13 | 53.66 |
| TraesCS5A01G042300.1 | Wheat | nucleus | 53.23 | 52.95 |
| TraesCS5D01G050600.1 | Wheat | nucleus | 50.44 | 51.7 |
| TraesCS6A01G356000.1 | Wheat | nucleus | 51.66 | 51.66 |
| OQU76528 | Sorghum | nucleus | 53.93 | 51.59 |
| Os06t0535100-00 | Rice | nucleus | 52.01 | 51.2 |
| Zm00001d013056_P001 | Maize | nucleus | 57.77 | 50.46 |
| KXG37786 | Sorghum | nucleus | 39.62 | 50.11 |
| Zm00001d000431_P001 | Maize | plastid | 42.41 | 50.0 |
| HORVU5Hr1G010160.3 | Barley | cytosol | 52.36 | 49.83 |
| Zm00001d023501_P001 | Maize | nucleus | 51.83 | 49.25 |
| TraesCS7A01G313300.1 | Wheat | nucleus | 24.61 | 45.63 |
| TraesCS7B01G213800.1 | Wheat | nucleus | 24.61 | 45.63 |
| TraesCS7D01G309800.1 | Wheat | nucleus | 24.43 | 44.87 |
| CDY42845 | Canola | cytosol | 26.18 | 33.41 |
| CDY47007 | Canola | cytosol | 26.0 | 33.18 |
| CDX81759 | Canola | cytosol | 24.61 | 28.89 |
| CDX96202 | Canola | cytosol | 13.96 | 28.78 |
| CDY52844 | Canola | cytosol | 24.43 | 28.75 |
| CDY17287 | Canola | nucleus | 31.94 | 27.98 |
| CDY40740 | Canola | cytosol | 26.18 | 27.73 |
| CDX70149 | Canola | nucleus | 27.75 | 26.59 |
| CDY44780 | Canola | mitochondrion | 26.7 | 26.47 |
| CDX79974 | Canola | nucleus | 31.76 | 26.45 |
| CDY14112 | Canola | cytosol | 27.4 | 26.43 |
| CDY04952 | Canola | nucleus | 27.4 | 26.43 |
| CDY23886 | Canola | plasma membrane | 31.59 | 25.82 |
| CDY41525 | Canola | mitochondrion | 27.05 | 21.8 |
| CDX84428 | Canola | mitochondrion | 26.88 | 21.78 |
| CDY49890 | Canola | mitochondrion | 24.96 | 18.33 |
| CDY45370 | Canola | mitochondrion | 24.96 | 18.29 |
| CDY40519 | Canola | nucleus | 23.73 | 17.94 |
| CDX69933 | Canola | cytosol | 4.19 | 17.65 |
| CDX79187 | Canola | cytosol | 24.61 | 16.63 |
| CDX68066 | Canola | cytosol | 24.61 | 16.55 |
| CDY50846 | Canola | nucleus | 23.73 | 16.21 |
| CDY53643 | Canola | nucleus | 23.73 | 16.11 |
| CDY52719 | Canola | nucleus, plastid | 22.51 | 15.56 |
| CDY34979 | Canola | nucleus, plastid | 22.34 | 15.38 |
| CDY32273 | Canola | nucleus | 22.16 | 13.91 |
| CDY21554 | Canola | mitochondrion | 27.05 | 11.41 |
| CDX69935 | Canola | mitochondrion | 27.23 | 11.31 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078CYR9 | EnsemblPlants:CDX82336 | ProteinID:CDX82336 | ProteinID:CDX82336.1 |
| ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF4217 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0005524 | EnsemblPlantsGene:GSBRNA2T00137454001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF13959 |
| ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF305 |
| InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SMART:SM01178 | SUPFAM:SSF52540 |
| UniParc:UPI0004EDD715 | SEG:seg | : | : | : | : |
Description
BnaA03g34850D
Coordinates
chrLK031828:+:653477..656852
Molecular Weight (calculated)
64770.4 Da
IEP (calculated)
9.444
GRAVY (calculated)
-0.492
Length
573 amino acids
Sequence
(BLAST)
(BLAST)
001: MVELEKKSSD EMKKRIRKRN RGKKSELQKT KEEETHLVEE NADEIPNKKE KKVKKVKSQE EDKTEEEVEA KEEEELDEEK KMVVVGKGIM TNETFESLEL
101: SEQTFEAIKT MGFEHMTQIQ AGSIPPLLEG KDVLGAARTG SGKTLAFLIP SVELLFKERF SPRNGTGVIV ICPTRELAIQ TKNVAEELLK HHSLTVSMVI
201: GGNNRRTEAQ RIANGSNLLI ATPGRLLDHL QHTKGFIYKH LKCLVIDEAD RILEENFEED MNKILKILPK TRQTALFSAT QTSKVQDLAR VSLTSPVLVD
301: VDDGRRKVTN EGLEQGYCVV PSEKRLLLLI SFLKKNLNKK IMVFFSTCKS VQFHAEIMKL INVESCDIHG GLDQNRRTKT FFDFMKAEKG ILLCTDVAAR
401: GLDIPSVDWI IQYDPPDKPT EYIHRVGRTA RGEGAKGKAL LVLIPEELQF IRYLKAAKVP VKELEFNEKK LLNVRSALEK YVANDYNLNK IAKEAYRAYI
501: AAYNSHSLKD IFNVHRLDLQ AVALSFCFSS PPKVHLNIES GAGKVRKARN QQGRNGFSPY SPYGKGKSTP KEA
101: SEQTFEAIKT MGFEHMTQIQ AGSIPPLLEG KDVLGAARTG SGKTLAFLIP SVELLFKERF SPRNGTGVIV ICPTRELAIQ TKNVAEELLK HHSLTVSMVI
201: GGNNRRTEAQ RIANGSNLLI ATPGRLLDHL QHTKGFIYKH LKCLVIDEAD RILEENFEED MNKILKILPK TRQTALFSAT QTSKVQDLAR VSLTSPVLVD
301: VDDGRRKVTN EGLEQGYCVV PSEKRLLLLI SFLKKNLNKK IMVFFSTCKS VQFHAEIMKL INVESCDIHG GLDQNRRTKT FFDFMKAEKG ILLCTDVAAR
401: GLDIPSVDWI IQYDPPDKPT EYIHRVGRTA RGEGAKGKAL LVLIPEELQF IRYLKAAKVP VKELEFNEKK LLNVRSALEK YVANDYNLNK IAKEAYRAYI
501: AAYNSHSLKD IFNVHRLDLQ AVALSFCFSS PPKVHLNIES GAGKVRKARN QQGRNGFSPY SPYGKGKSTP KEA
001: MVESDKSSVE ELKKRVRKRS RGKKNEQQKA EEKTHTVEEN ADETQKKSEK KVKKVRGKIE EEEEKVEAME DGEDEKNIVI VGKGIMTNVT FDSLDLSEQT
101: SIAIKEMGFQ YMTQIQAGSI QPLLEGKDVL GAARTGSGKT LAFLIPAVEL LFKERFSPRN GTGVIVICPT RELAIQTKNV AEELLKHHSQ TVSMVIGGNN
201: RRSEAQRIAS GSNLVIATPG RLLDHLQNTK AFIYKHLKCL VIDEADRILE ENFEEDMNKI LKILPKTRQT ALFSATQTSK VKDLARVSLT SPVHVDVDDG
301: RRKVTNEGLE QGYCVVPSKQ RLILLISFLK KNLNKKIMVF FSTCKSVQFH TEIMKISDVD VSDIHGGMDQ NRRTKTFFDF MKAKKGILLC TDVAARGLDI
401: PSVDWIIQYD PPDKPTEYIH RVGRTARGEG AKGKALLVLI PEELQFIRYL KAAKVPVKEL EFNEKRLSNV QSALEKCVAK DYNLNKLAKD AYRAYLSAYN
501: SHSLKDIFNV HRLDLLAVAE SFCFSSPPKV NLNIESGAGK VRKARKQQGR NGFSPYSPYG KSTPTKEA
101: SIAIKEMGFQ YMTQIQAGSI QPLLEGKDVL GAARTGSGKT LAFLIPAVEL LFKERFSPRN GTGVIVICPT RELAIQTKNV AEELLKHHSQ TVSMVIGGNN
201: RRSEAQRIAS GSNLVIATPG RLLDHLQNTK AFIYKHLKCL VIDEADRILE ENFEEDMNKI LKILPKTRQT ALFSATQTSK VKDLARVSLT SPVHVDVDDG
301: RRKVTNEGLE QGYCVVPSKQ RLILLISFLK KNLNKKIMVF FSTCKSVQFH TEIMKISDVD VSDIHGGMDQ NRRTKTFFDF MKAKKGILLC TDVAARGLDI
401: PSVDWIIQYD PPDKPTEYIH RVGRTARGEG AKGKALLVLI PEELQFIRYL KAAKVPVKEL EFNEKRLSNV QSALEKCVAK DYNLNKLAKD AYRAYLSAYN
501: SHSLKDIFNV HRLDLLAVAE SFCFSSPPKV NLNIESGAGK VRKARKQQGR NGFSPYSPYG KSTPTKEA
Arabidopsis Description
RH51DEAD-box ATP-dependent RNA helicase 51 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIH9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.