Factsheet for TraesCS6B01G342900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, peroxisome
MultiLoc:	nucleus
PProwler:	peroxisome
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G312900.1	Wheat	nucleus	93.22	92.04
TraesCS6D01G292400.1	Wheat	nucleus	92.86	91.68
HORVU4Hr1G000640.1	Barley	cytosol, nucleus	74.54	81.89
OQU76528	Sorghum	nucleus	79.3	72.29
Zm00001d023501_P001	Maize	nucleus	78.94	71.48
TraesCS5B01G120400.1	Wheat	nucleus	71.25	67.07
GSMUA_Achr10P...	Banana	cytosol	61.17	64.6
Os06t0535100-00	Rice	nucleus	67.77	63.57
VIT_17s0000g04310.t01	Wine grape	cytosol	58.06	57.64
GSMUA_Achr7P07500_001	Banana	cytosol, nucleus, peroxisome	57.69	56.45
KRH62970	Soybean	nucleus	55.68	56.09
Solyc03g114370.2.1	Tomato	nucleus	57.88	55.83
PGSC0003DMT400063252	Potato	nucleus	57.51	55.48
KRH54795	Soybean	nucleus	54.95	54.84
KRH03838	Soybean	nucleus	56.96	54.09
KRH56711	Soybean	nucleus	56.59	54.02
TraesCS7B01G213800.1	Wheat	nucleus	29.85	52.75
Bra037574.1-P	Field mustard	nucleus	54.03	52.12
CDY18530	Canola	nucleus	54.21	52.11
Bra022336.1-P	Field mustard	nucleus	53.85	51.76
CDX99342	Canola	nucleus	53.85	51.76
CDX95512	Canola	nucleus	54.03	51.75
CDX92251	Canola	nucleus	53.85	51.67
AT3G18600.1	Thale cress	nucleus	53.48	51.41
CDX82336	Canola	nucleus	53.66	51.13
CDX75974	Canola	nucleus	53.66	50.34
CDY36514	Canola	nucleus	52.38	49.06
Bra024428.1-P	Field mustard	nucleus	52.75	48.73
Bra001713.1-P	Field mustard	nucleus	53.85	48.51
CDY08740	Canola	nucleus	52.75	48.48
AT5G65900.1	Thale cress	nucleus	50.73	43.76
TraesCS1B01G037600.1	Wheat	nucleus	30.95	27.44
TraesCS3B01G252700.2	Wheat	nucleus	23.81	27.25
TraesCS6B01G142500.1	Wheat	mitochondrion, nucleus	23.44	26.67
TraesCS2B01G179900.1	Wheat	cytosol	23.99	25.64
TraesCS3B01G252600.1	Wheat	plastid	27.29	25.47
TraesCS2B01G150800.1	Wheat	mitochondrion	23.99	25.39
TraesCS3B01G116900.1	Wheat	plastid	27.84	23.64
TraesCS2B01G247500.1	Wheat	nucleus	30.4	21.76
TraesCS6B01G455000.1	Wheat	cytosol	25.82	16.73
TraesCS5B01G378100.1	Wheat	nucleus	23.63	16.56
TraesCS7B01G232200.1	Wheat	mitochondrion	29.3	16.51
TraesCS4B01G341100.1	Wheat	plastid	24.54	15.69
TraesCS2B01G384300.1	Wheat	nucleus	21.61	14.13

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF13959
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF305
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SMART:SM01178	SUPFAM:SSF52540
EnsemblPlantsGene:TraesCS6B01G342900	EnsemblPlants:TraesCS6B01G342900.1	TIGR:cd00079	TIGR:cd00268	SEG:seg	:

Description

No Description!

Coordinates

chr6B:+:603905847..603910110

Molecular Weight (calculated)

62262.3 Da

IEP (calculated)

9.750

GRAVY (calculated)

-0.484

Length

546 amino acids

Sequence
(BLAST)

001: MGKSLPRPSK EEEEEKEENV MEGMRKRKRK REEEKGMYRL EEEEEKEQKG KGGGILTNEL FSELCVSELT AKAIREMNYT HLTQIQARSI PHLMVGDGVL
101: GSARTGSGKT LAFLIPAIEL LHNAHFTPRN GTVVIVVCPT RELAIQTHDV AKKLMKYHSQ TLGYVIGGTN MRSEANQLVK GVNLLVATPG RLLDHLKSTS
201: GFNYKGLKCL IIDEADRILE QNFEEDMKQI FKRLPQNRQT VLFSATQTQR VEDFANFTFG KKEERQRKLV YVGVDDSELK PTVDGLQQGY CVIPSEKRFL
301: VLYTFLRKMQ LMKQKVKVMV FFSSCSSVKF HAEFLNFIGI DRNALLHSFN FQKRKNGILL CTNVAARGLD IPNVDYIVQY DPPDDPKDYI HRVGRTARGD
401: KGKGCAFLFL LPEELKLLIY LHASNISLTE YEFSEKHVPK SQSRLEKIVA GNYFLNQSAK EAYRSYLLAY NSHSMKDIFD VHQLDLKKVA ASFCFNSPPK
501: VNLNLESSAS RHRKMTKVDG RKRHGISPSN PYGRRGGCDR MDLARF

Best Arabidopsis Sequence Match ( AT1G71370.1 )
(BLAST)

001: MDSSPPKTIT KALPRFSELK PPLSEDIIEA LDRSGFEVCT PVQAETIPFL CSHKDVVVDA ATGSGKTLAF LLPFIEIIRR SNSYPPKPHQ VMGVIISPTR
101: ELSAQIHKVA EPFVSTLPNV NSVLLVGGRE VEADMNTLEE EGANLLIGTP GRLSDMMKRM EFLDFRNLEI LILDEADRLL DMGFQKQVNY IISRLPKQRR
201: TGLFSATQTQ AVADLAKAGL RNAMEVISGA ESKSKTSSGL YCEYLKCEAD QKSSQLVHLL IENKNKKLVV FFMTCACVDY WGLVLSKIPT LKSISFFSTH
301: GKMDQKGRDT ALASFTEASS GVLLCTDVAA RGLDIPGIDY VVQYDPPQDP DVFIHRVGRT ARMERQGRAI VFLMPKETDY VEFMRIRRVP LQERKCSENA
401: SDVIPIIRSL AIKDRAVLEK GLQAFVSFVR AYKEHHCSYI FSWKGLEIGK LAMGYGILSF PYISEVKQDR IGIVGFTPVQ GITFEDIKYK NKSREKQRQQ
501: NLLARKDKLQ QEKRGKRKKS SKEAVDDSNK ASRKRKLTGR QRQTIQTAQD EEEMNLRL

Arabidopsis Description

RH49DEAD-box ATP-dependent RNA helicase 49 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXD6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.