Factsheet for TraesCS2B01G179900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G160100.1	Wheat	cytosol	98.24	98.43
TraesCS2A01G154800.1	Wheat	cytosol	97.85	98.04
Os07t0633500-00	Rice	nucleus	63.41	80.4
EER99761	Sorghum	cytosol	77.3	78.69
HORVU2Hr1G028120.2	Barley	plastid	74.95	77.06
Zm00001d022246_P001	Maize	cytosol	76.13	74.81
VIT_19s0085g00510.t01	Wine grape	cytosol	56.75	59.3
PGSC0003DMT400029241	Potato	cytosol	54.79	57.49
Solyc10g005520.2.1	Tomato	cytosol	54.6	57.17
CDY52844	Canola	cytosol	53.03	55.65
Bra026724.1-P	Field mustard	nucleus	52.84	55.56
CDX81759	Canola	cytosol	52.64	55.12
AT1G16280.1	Thale cress	nucleus	51.47	53.56
GSMUA_Achr5P09910_001	Banana	nucleus	49.32	53.16
KRH43700	Soybean	cytosol	52.25	45.56
KRH13749	Soybean	cytosol, plastid	51.27	44.33
TraesCS6B01G142500.1	Wheat	mitochondrion, nucleus	32.88	35.0
TraesCS2B01G150800.1	Wheat	mitochondrion	33.46	33.14
TraesCS6B01G342900.1	Wheat	nucleus	25.64	23.99
TraesCS3B01G252700.2	Wheat	nucleus	21.14	22.64
TraesCS5B01G120400.1	Wheat	nucleus	25.64	22.59
TraesCS3B01G252600.1	Wheat	plastid	24.46	21.37
TraesCS1B01G037600.1	Wheat	nucleus	23.87	19.81
TraesCS5B01G378100.1	Wheat	nucleus	28.57	18.74
TraesCS3B01G116900.1	Wheat	plastid	23.09	18.35
TraesCS2B01G384300.1	Wheat	nucleus	28.77	17.6
TraesCS7B01G213800.1	Wheat	nucleus	9.59	15.86
TraesCS2B01G247500.1	Wheat	nucleus	23.09	15.47
TraesCS4B01G341100.1	Wheat	plastid	25.64	15.34
TraesCS6B01G455000.1	Wheat	cytosol	23.29	14.12
TraesCS7B01G232200.1	Wheat	mitochondrion	24.85	13.11

Protein Annotations

MapMan:17.1.3.2.1.15	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006364	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009553
GO:GO:0009561	GO:GO:0009791	GO:GO:0009987	GO:GO:0090406	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF552
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS2B01G179900
EnsemblPlants:TraesCS2B01G179900.1	TIGR:cd00079	TIGR:cd00268	SEG:seg	:	:

Description

No Description!

Coordinates

chr2B:+:154485482..154489828

Molecular Weight (calculated)

56391.1 Da

IEP (calculated)

7.149

GRAVY (calculated)

-0.384

Length

511 amino acids

Sequence
(BLAST)

001: MEVDGEARPF LLFSKPKSNR RTEPQPQVQA QPKPPKPDPT PAVQTDHGDS GDSDDSGSDS DSDPAPTVVT DHGDTCSADG GAAADALASF ADLGLSEWLV
101: DVCTSLGMRR PTAVQRRCIP RALAGENVLG IAETGSGKTA AFALPILHRL GEDPFGVAAL ALAPTRELAA QLAEQFRALG SPLGLRCLAA IGGFDSLAQA
201: KGLARRPHVV VATPGRIATL IKNDPDLAKV FARTKFLVLD EADRVVDSNF EEDLKVIFDC LPKKRQTFLF SATMSDNLRS LLELSGSKSY FFEAYEGFKT
301: VENLKQQYIH IPPDGKELHL LYLLSKMKED NIRSAIVFVS TCRTCQYLDF VLQELGRPAV SLHSHKAQSQ RLSALHRFKS GQVPVLIATD VASRGLDIQT
401: VDLVINYDIP RFPRDYIHRV GRTARATRGG LSISFITQRD ICLLHEIEDD VGNRFSAYEC DDKEVTKDIT KVFKARRLAN MRMADEGHED KVQDRKDQKK
501: RDQARKRKHD E

Best Arabidopsis Sequence Match ( AT1G16280.1 )
(BLAST)

001: MEEPTPEEEG GITIMSKSRK NPKTVVNIQS QKLDSDQNTP QFEKFTNPNP SSDTTSATNF EGLGLAEWAV ETCKELGMRK PTPVQTHCVP KILAGRDVLG
101: LAQTGSGKTA AFALPILHRL AEDPYGVFAL VVTPTRELAF QLAEQFKALG SCLNLRCSVI VGGMDMLTQT MSLVSRPHIV ITTPGRIKVL LENNPDVPPV
201: FSRTKFLVLD EADRVLDVGF QDELRTIFQC LPKSRQTLLF SATMTSNLQA LLEHSSNKAY FYEAYEGLKT VDTLTQQFIF EDKDAKELYL VHILSQMEDK
301: GIRSAMIFVS TCRTCQRLSL MLDELEVENI AMHSLNSQSM RLSALSKFKS GKVPILLATD VASRGLDIPT VDLVINYDIP RDPRDYVHRV GRTARAGRGG
401: LAVSIITETD VKLIHKIEEE VGKKMEPYNK KVITDSLEVT KVSKAKRVAM MKMLDNGFED KVKDRRKLKR KTLADKGLLK KRGKRQKSTE N

Arabidopsis Description

RH36DEAD-box ATP-dependent RNA helicase 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.