Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G392700.1 | Wheat | cytosol | 98.7 | 98.81 |
| HORVU6Hr1G093300.7 | Barley | cytosol, nucleus | 85.29 | 94.61 |
| TraesCS6A01G409100.1 | Wheat | cytosol | 98.7 | 93.91 |
| Os02t0826100-01 | Rice | cytosol | 76.63 | 79.65 |
| EES07789 | Sorghum | mitochondrion | 77.7 | 79.59 |
| Zm00001d018516_P002 | Maize | mitochondrion | 76.39 | 78.73 |
| GSMUA_Achr3P14380_001 | Banana | cytosol | 38.79 | 73.15 |
| KRH41139 | Soybean | nucleus | 50.53 | 60.25 |
| VIT_02s0025g03950.t01 | Wine grape | mitochondrion | 53.74 | 60.08 |
| VIT_06s0004g07260.t01 | Wine grape | extracellular, vacuole | 11.03 | 58.12 |
| PGSC0003DMT400010896 | Potato | cytosol, nucleus, plastid | 51.25 | 53.6 |
| CDY45370 | Canola | mitochondrion | 49.35 | 53.2 |
| Solyc12g056340.1.1 | Tomato | cytosol, nucleus, plastid | 50.77 | 53.17 |
| Bra027808.1-P | Field mustard | mitochondrion | 49.23 | 53.14 |
| CDY49890 | Canola | mitochondrion | 48.87 | 52.82 |
| KRH59841 | Soybean | nucleus | 32.5 | 51.8 |
| AT1G63250.1 | Thale cress | mitochondrion | 48.75 | 51.5 |
| TraesCS3B01G252700.2 | Wheat | nucleus | 28.71 | 50.73 |
| AT2G07750.1 | Thale cress | plastid | 48.4 | 48.28 |
| TraesCS3B01G252600.1 | Wheat | plastid | 32.5 | 46.84 |
| TraesCS7B01G232200.1 | Wheat | mitochondrion | 36.3 | 31.58 |
| TraesCS5B01G120400.1 | Wheat | nucleus | 18.15 | 26.38 |
| TraesCS6B01G342900.1 | Wheat | nucleus | 16.73 | 25.82 |
| TraesCS6B01G142500.1 | Wheat | mitochondrion, nucleus | 14.23 | 25.0 |
| TraesCS1B01G037600.1 | Wheat | nucleus | 17.79 | 24.35 |
| TraesCS2B01G150800.1 | Wheat | mitochondrion | 14.47 | 23.64 |
| TraesCS2B01G179900.1 | Wheat | cytosol | 14.12 | 23.29 |
| TraesCS3B01G116900.1 | Wheat | plastid | 16.13 | 21.15 |
| TraesCS7B01G213800.1 | Wheat | nucleus | 7.35 | 20.06 |
| KRH54980 | Soybean | nucleus | 3.91 | 18.54 |
| TraesCS5B01G378100.1 | Wheat | nucleus | 17.08 | 18.49 |
| TraesCS2B01G247500.1 | Wheat | nucleus | 16.25 | 17.96 |
| TraesCS2B01G384300.1 | Wheat | nucleus | 17.08 | 17.25 |
| TraesCS4B01G341100.1 | Wheat | plastid | 14.12 | 13.93 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 |
| PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF324 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 |
| SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS6B01G455000 | EnsemblPlants:TraesCS6B01G455000.1 | TIGR:cd00079 | TIGR:cd00268 | : |
Description
No Description!
Coordinates
chr6B:-:712235600..712240076
Molecular Weight (calculated)
95085.3 Da
IEP (calculated)
9.830
GRAVY (calculated)
-0.525
Length
843 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGGPRTFPG GLSKWQHKRM HEKLARGKER GLLRHEKQLY LARLRSEIRA SHLPGAPASP ADHAGPTSSR AHIRALADRF LRPGAEDLWN DDDGPLRRAR
101: LPPHQQQQPA RSLPSGARMV DWKQVESGEK PKPPRGGGDW KDWEELDSGE PTAGRGAGNE PRLPAAFNQR RGYGTAAPWW WQWSPGSGTP SQRKEASFGF
201: FGPKRCYSVM PPCSPCRESG AALMPLVARQ LAEAGNGRKA TPLALFYTQE RLYSVAAPRR FGQKWRPDSS DEDEEVMPAA RDLRLAKFVA SREDESEDDE
301: PGETSAIRRK WSTAALRNCD MKRDRRPLKS YEEESDDDIT GRIQELREEI RNREVLGAER RRYESRGESV FTNKRFDECG ISPLTVKALT DAGYIQTTVV
401: QEAALPVCLE GKDVLVKAKT GTGKSVAFLL PAIESVLNAM KSHTNHRVSP IFALVLCPTR ELAVQVTAEA NVLVKYHHGV GVQSLIGGTR FKLDQRRLES
501: DPCQILVATP GRLLDHIENR SSFSVRLMGL KLLVLDEADH LLDLGFRKDI EKIADSLPRQ RQTLLFSATV PKEVRRVSQM VLNKDHVFVD TVGLGAVETP
601: TKVQQQYLVV PHELHFHMVH RLLREHIDQE VDYKVIVFCT TAMVTEFMYI MLRDLKLNVR EIHSRKPQLY RTRISEEFRD SNRLILVTSD VSTRGVNYPD
701: VTLVIQAGVP PGREHYIHRL GRTGREGKSG KGILLIAPWE EYFLKEIHDL PIQKAPVPQI DQEMKQKVDD SIRIVDMSIK EAAYHAWLGY YNSIADISRD
801: KVMLADLASR FGVSIGMEKP PMLFRKTALK MGLKGVPGIR IRK
101: LPPHQQQQPA RSLPSGARMV DWKQVESGEK PKPPRGGGDW KDWEELDSGE PTAGRGAGNE PRLPAAFNQR RGYGTAAPWW WQWSPGSGTP SQRKEASFGF
201: FGPKRCYSVM PPCSPCRESG AALMPLVARQ LAEAGNGRKA TPLALFYTQE RLYSVAAPRR FGQKWRPDSS DEDEEVMPAA RDLRLAKFVA SREDESEDDE
301: PGETSAIRRK WSTAALRNCD MKRDRRPLKS YEEESDDDIT GRIQELREEI RNREVLGAER RRYESRGESV FTNKRFDECG ISPLTVKALT DAGYIQTTVV
401: QEAALPVCLE GKDVLVKAKT GTGKSVAFLL PAIESVLNAM KSHTNHRVSP IFALVLCPTR ELAVQVTAEA NVLVKYHHGV GVQSLIGGTR FKLDQRRLES
501: DPCQILVATP GRLLDHIENR SSFSVRLMGL KLLVLDEADH LLDLGFRKDI EKIADSLPRQ RQTLLFSATV PKEVRRVSQM VLNKDHVFVD TVGLGAVETP
601: TKVQQQYLVV PHELHFHMVH RLLREHIDQE VDYKVIVFCT TAMVTEFMYI MLRDLKLNVR EIHSRKPQLY RTRISEEFRD SNRLILVTSD VSTRGVNYPD
701: VTLVIQAGVP PGREHYIHRL GRTGREGKSG KGILLIAPWE EYFLKEIHDL PIQKAPVPQI DQEMKQKVDD SIRIVDMSIK EAAYHAWLGY YNSIADISRD
801: KVMLADLASR FGVSIGMEKP PMLFRKTALK MGLKGVPGIR IRK
001: MYSLILRERS GSITGSLWNR ISSRNMGGGP RTFPGGLNKW QWKRMHEKKA REKENKLLDQ EKQLYEARIR TEIRAKMWGN PDSGEKTAKS KQSHGPMSPK
101: EHIKTLADRF MKAGAEDFWN ENDGPVKKSD QGSRSGSDSI DSTSNSPIDV RRLVSATCDS MGKNRVFGSS RRGFSSMSRF KRNESSCDEG DDFDAKKLDT
201: LSPFSPKFAG TKEKVKSSRS VVGVIRNKGL FGRRKFRKND SSTEEDSDEE GDEGKMIGWM DMRKTGSSAS LGNHDIKLTK RVNRNVTDEE LYPPLDINTV
301: REDLSKRKSV DNVMEEKQEP HDSIYSAKRF DESCISPLTL KALSASGILK MTRVQDATLS ECLDGKDALV KAKTGTGKSM AFLLPAIETV LKAMNSGKGV
401: NKVAPIFALI LCPTRELASQ IAAEGKALLK FHDGIGVQTL IGGTRFKLDQ QRLESEPCQI LIATPGRLLD HIENKSGLTS RLMALKLFIV DEADLLLDLG
501: FRRDVEKIID CLPRQRQSLL FSATIPKEVR RVSQLVLKRD HSYIDTIGLG CVETHDKVRQ SCIVAPHESH FHLVPHLLKE HINNTPDYKI IVFCSTGMVT
601: SLMYTLLREM KLNVREIHAR KPQLHRTRVS DEFKESNRLI LVTSDVSARG MNYPDVTLVI QVGIPSDREQ YIHRLGRTGR EGKGGEGLLL IAPWERYFLD
701: ELKDLPLEPI PAPDLDSIVK HQVDQSMAKI DTSIKEAAYH AWLGYYNSVR ETGRDKTTLA ELANRFCHSI GLEKPPALFR RTAVKMGLKG ISGIPIRK
101: EHIKTLADRF MKAGAEDFWN ENDGPVKKSD QGSRSGSDSI DSTSNSPIDV RRLVSATCDS MGKNRVFGSS RRGFSSMSRF KRNESSCDEG DDFDAKKLDT
201: LSPFSPKFAG TKEKVKSSRS VVGVIRNKGL FGRRKFRKND SSTEEDSDEE GDEGKMIGWM DMRKTGSSAS LGNHDIKLTK RVNRNVTDEE LYPPLDINTV
301: REDLSKRKSV DNVMEEKQEP HDSIYSAKRF DESCISPLTL KALSASGILK MTRVQDATLS ECLDGKDALV KAKTGTGKSM AFLLPAIETV LKAMNSGKGV
401: NKVAPIFALI LCPTRELASQ IAAEGKALLK FHDGIGVQTL IGGTRFKLDQ QRLESEPCQI LIATPGRLLD HIENKSGLTS RLMALKLFIV DEADLLLDLG
501: FRRDVEKIID CLPRQRQSLL FSATIPKEVR RVSQLVLKRD HSYIDTIGLG CVETHDKVRQ SCIVAPHESH FHLVPHLLKE HINNTPDYKI IVFCSTGMVT
601: SLMYTLLREM KLNVREIHAR KPQLHRTRVS DEFKESNRLI LVTSDVSARG MNYPDVTLVI QVGIPSDREQ YIHRLGRTGR EGKGGEGLLL IAPWERYFLD
701: ELKDLPLEPI PAPDLDSIVK HQVDQSMAKI DTSIKEAAYH AWLGYYNSVR ETGRDKTTLA ELANRFCHSI GLEKPPALFR RTAVKMGLKG ISGIPIRK
Arabidopsis Description
RH48Probable DEAD-box ATP-dependent RNA helicase 48 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8S9]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.