Factsheet for Solyc12g056340.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010896	Potato	cytosol, nucleus, plastid	95.9	95.78
GSMUA_Achr3P14380_001	Banana	cytosol	40.87	73.6
VIT_02s0025g03950.t01	Wine grape	mitochondrion	63.35	67.64
KRH41139	Soybean	nucleus	56.89	64.78
VIT_06s0004g07260.t01	Wine grape	extracellular, vacuole	12.17	61.25
Bra027808.1-P	Field mustard	mitochondrion	56.77	58.51
CDY45370	Canola	mitochondrion	56.65	58.31
CDY49890	Canola	mitochondrion	56.27	58.08
AT1G63250.1	Thale cress	mitochondrion	56.27	56.77
Os02t0826100-01	Rice	cytosol	55.4	54.99
EES07789	Sorghum	mitochondrion	55.9	54.68
Zm00001d018516_P002	Maize	mitochondrion	55.16	54.28
KRH59841	Soybean	nucleus	35.65	54.25
AT2G07750.1	Thale cress	plastid	55.9	53.25
TraesCS6D01G392700.1	Wheat	cytosol	53.42	51.07
TraesCS6B01G455000.1	Wheat	cytosol	53.17	50.77
HORVU6Hr1G093300.7	Barley	cytosol, nucleus	46.96	49.74
TraesCS6A01G409100.1	Wheat	cytosol	53.04	48.19
Solyc01g095740.2.1	Tomato	nucleus	38.51	35.63
Solyc10g007550.2.1	Tomato	cytosol, nucleus	15.4	28.25
Solyc03g114370.2.1	Tomato	nucleus	19.38	27.56
Solyc02g078880.2.1	Tomato	nucleus	17.14	23.23
Solyc10g005520.2.1	Tomato	cytosol	14.04	23.16
Solyc07g042270.2.1	Tomato	nucleus	16.15	21.78
Solyc04g081580.2.1	Tomato	nucleus	18.26	19.76
KRH54980	Soybean	nucleus	4.22	19.1
Solyc07g064520.2.1	Tomato	nucleus	17.39	18.57
Solyc09g090740.2.1	Tomato	nucleus	17.27	17.4
Solyc10g009070.2.1	Tomato	nucleus	14.78	15.16

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:K4DFW5	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF324	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc12g056340.1
EnsemblPlants:Solyc12g056340.1.1	UniParc:UPI0002769EAF	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12:+:62297673..62303549

Molecular Weight (calculated)

92439.7 Da

IEP (calculated)

9.097

GRAVY (calculated)

-0.646

Length

805 amino acids

Sequence
(BLAST)

001: MGGGPRTFPG GLNKWQWKRL HEKKARDKEN RLLDQEKQLY QARIRSQIRA KLTSSGEQSD FSNEQQPNYS PVSPQDHIRG LADRFMKEGA EDLWNEDDGP
101: VNTPQINQQS GGISESIDLR KLRDTKFNDV PRSYSFQKAR NFCTNISDVF AENCRTRNPT FSDSWSRQNK FLMFGWRLVN IENRNVNNLN GFLNYRCYSV
201: DRMNGNKLRK LDFTRNESSQ SEDKLRSVGL VVKGERKAKW PRFRPKPEES TDEDDDEDTE VDEDEEERRS RGSVKMMSSA ALGKYDMKTK KRVPLKFVED
301: EDDLSLHVAA IRKEVKGRSM QKIETEEDEK ETILSSKRFD EYDVSPLTVK ALTAAGYVQM TKVQEATLST CLEGKDALVK ARTGTGKSAA FLLPAIETVL
401: KASRKKSAQR VPPIDVLILC PTRELASQIA AEANVLLKYH EGIGVQTLVG GTRFKEDQKR LECDPCQIIV ATPGRLLDHI ENKSGFSTRI MGLKMLILDE
501: ADHLLDLGFR KDIEKLVDCL PRRRQSLLFS ATVPKEVRRI SQLVLKREYD YVDTVGLGLE TNPKVKQFYL VAPHEQHFQV VHHLLSSHIS EVPDYKVIVF
601: CTTAMMTSLM FSLFHEMKMN VREIHSRKPQ LYRTRISDEF KETKRVILIT SDVSARGMNY PDVTLVIQVG LPVDREQYIH RLGRTGREGK EGEGILLLAP
701: WEQYFLDDIK DLPMENWPVP RLDPRVKVKM EEAMEKMDTS VKESAYHAWL GYYNSVREVG RDKTTLVELA NQFSESIGLD KPPSLFRRTA LKMGLKDIPG
801: IRIRK

Best Arabidopsis Sequence Match ( AT2G07750.1 )
(BLAST)

001: MAMAMRLPAI SRAVTEVASS PVGLRRLFCS NASRFSFLSP PARRQAEPST NLFHSGLSKR ITSERSLWNR IFSRNMGGGP RTFPGGLNKW QWKRMHEKKA
101: REKENKLLDQ EKQLYEARIR TEIRAKMWGH PDSGEKTAKL KQSHGPMSPK EHIKTLADRF MKAGADDLWN DNDGPVKKFD QGSRSCSDSI DSTPIDVRRL
201: VSATCDSMGK HRVLDSSRRG FSSMSRFKRN ESSCDEGDDV DAKKLDTLSP FSPKFSGTKE KVKSSTSVVG VIRNKGLFGR RKFRKNDSST EEDSDEEGNE
301: GKMIGWMDLR KTGSSASLGN HDIKLTKRVN RNVTDEELYP PLDINRVRED LSKKQSVDNV MEEKQEPHDS IYSAKRFDES CISPLTLKAL SASGIVKMTR
401: VQDATLSECL DGKDALVKAK TGTGKSMAFL LPAIETVLKA MNSGKGVHKV APIFVLILCP TRELASQIAA EGKALLKNHD GIGVQTLIGG TRFRLDQQRL
501: ESEPCQILIA TPGRLLDHIE NKSGLTSRLM ALKLFIVDEA DLLLDLGFKR DVEKIIDCLP RQRQSLLFSA TIPKEVRRVS QLVLKRDHSY IDTIGLGCVE
601: THDKVKQSCI VAPHESHFHL VPHLLKEHIN NMPDYKIIVF CSTGMVTSLM YTLLREMKLN VREIHARKPQ LHRTCVSDEF KESNRLILVT SDVSARGMNY
701: PDVTLVIQVG IPSDREQYIH RLGRTGREGK GGKGLLLIAP WERYFLDELK DLPLEPIPAP DLDSRVKHQV DQSMAKIDTS IKEAAYHAWL GYYNSVRETG
801: RDKTTLAELA NRFCHSIGLE KPPALFRRTA VKMGLKGISG IPIRK

Arabidopsis Description

RH33Putative DEAD-box ATP-dependent RNA helicase 33 [Source:UniProtKB/Swiss-Prot;Acc:O80792]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.