Factsheet for Solyc01g095740.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000611	Potato	mitochondrion	94.02	93.92
Bra009356.1-P	Field mustard	cytosol	43.68	67.74
KRH47920	Soybean	nucleus	53.56	66.29
Os01t0618500-01	Rice	nucleus	40.8	66.23
Bra028652.1-P	Field mustard	nucleus	41.15	66.17
CDY40740	Canola	cytosol	41.03	65.99
AT5G08620.1	Thale cress	nucleus	42.41	65.54
VIT_15s0046g01010.t01	Wine grape	plastid	56.67	64.11
EES03287	Sorghum	cytosol	40.92	63.46
CDY44780	Canola	mitochondrion	42.07	63.32
CDX84428	Canola	mitochondrion	51.38	63.22
AT5G63630.2	Thale cress	mitochondrion, plastid	51.95	63.13
HORVU3Hr1G054730.1	Barley	cytosol, mitochondrion, nucleus, plastid	38.85	62.83
CDY41525	Canola	mitochondrion	51.15	62.59
TraesCS3B01G252700.2	Wheat	nucleus	34.02	62.05
Zm00001d044203_P001	Maize	plasma membrane	39.77	61.79
TraesCS3A01G222500.1	Wheat	nucleus, plastid	38.05	61.52
TraesCS3D01G230300.1	Wheat	nucleus	37.93	61.34
OQU76491	Sorghum	nucleus	46.21	61.28
Zm00001d044208_P001	Maize	plastid	41.26	61.26
Os01t0618400-01	Rice	nucleus, plasma membrane	41.72	61.11
EES01082	Sorghum	mitochondrion, plastid	41.03	60.71
TraesCS3D01G230400.2	Wheat	mitochondrion	41.03	60.71
TraesCS3B01G252600.1	Wheat	plastid	40.8	60.68
TraesCS3A01G222700.1	Wheat	mitochondrion	40.8	60.37
Bra009355.1-P	Field mustard	mitochondrion, plastid	52.53	59.97
Bra038650.1-P	Field mustard	mitochondrion	51.15	59.89
KRH06491	Soybean	nucleus	54.71	59.06
GSMUA_Achr10P...	Banana	mitochondrion	50.23	57.73
GSMUA_Achr8P04210_001	Banana	cytosol	46.44	54.59
AT5G08610.1	Thale cress	mitochondrion, plastid	52.99	54.24
Zm00001d046097_P001	Maize	mitochondrion	50.8	47.22
Os06t0526600-01	Rice	mitochondrion	49.66	46.8
TraesCS7D01G328100.1	Wheat	mitochondrion	49.43	44.84
TraesCS7B01G232200.1	Wheat	mitochondrion	49.89	44.79
TraesCS7A01G350700.1	Wheat	mitochondrion	49.54	44.52
Solyc12g056340.1.1	Tomato	cytosol, nucleus, plastid	35.63	38.51
CDY21554	Canola	mitochondrion	51.72	33.11
CDX69935	Canola	mitochondrion	51.61	32.56
Solyc03g114370.2.1	Tomato	nucleus	18.85	28.98
Solyc10g005520.2.1	Tomato	cytosol	15.63	27.87
Solyc10g007550.2.1	Tomato	cytosol, nucleus	14.02	27.79
Solyc07g042270.2.1	Tomato	nucleus	16.55	24.12
Solyc02g078880.2.1	Tomato	nucleus	15.75	23.06
Solyc07g064520.2.1	Tomato	nucleus	18.05	20.82
Solyc04g081580.2.1	Tomato	nucleus	17.13	20.03
Solyc09g090740.2.1	Tomato	nucleus	16.78	18.27
Solyc10g009070.2.1	Tomato	nucleus	14.71	16.31

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:K4AZW3	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF528	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc01g095740.2
EnsemblPlants:Solyc01g095740.2.1	UniParc:UPI00027674F1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:-:86937684..86944774

Molecular Weight (calculated)

96196.7 Da

IEP (calculated)

9.613

GRAVY (calculated)

-0.727

Length

870 amino acids

Sequence
(BLAST)

001: MPLKLLPQLR FFNPTFPLTH FPTMKCNSTL KPKTIPAFSR MFPHKLKYRS IAFPILAAQE QELRRFSSRS GRPRPGSGAD VRVSKSLIED EAELSDWVSG
101: LRSDSSFTKT QVYSESDDNE GDRERGRGRF SNRRNGGEDR GEKRRRDDDF SGPGRRGGGP MQSNSRNGGR FGSEYSGGRG AGRGGMQSNS RNEGRFGNDR
201: GSRYEGGRGD GGRDRKESSS RGGRFGSDVR SGSEGRRSGG RDRMESFSKG GRFGSDNGRE SEGRRSGGQD RTESLPRKGG RFGSEMASSS DNRGKSRIGS
301: GYGRDMAAQG GNGRLGRKEG AGMGRGSSML LDEDDTDNED DEEEEENGYK GFRDLIDSEE ESEESDEDNE VEDEKMASLE EDSPRASSPS SHGKSDSHLT
401: ETRFDQFPLS PLSLKGVKDA GYKTMTVVQE ATLPIILKGK DVLAKAKTGT GKTVAFLLPS IEVVVKSPPN TRDQKRPPIL VLVICPTREL ATQAAAEANT
501: LLKYHPSIGV QVVIGGTRLA LEQKRMQANP CQILVATPGR LRDHVENTAG FATRLMGVKV LVLDEADHLL DMGFRKEIER IISAIPKQRQ TLLFSATVPP
601: EVRQICHIAL KRDHEFINTV EEGSEETHAQ VQQMHLVSPL ESHFSLLYAL LKEHIADDVN YKVLVFCTTA MVTKLVAELL GELNLNVREI HSRKPQSYRT
701: RVSDEFRQST GLILVSSDVS ARGVDYPDVT LVVQIGVPAD RQQYIHRLGR TGRKGKEGQG ILLLAPWEEF FLSTIKDLPV SKAPVPLLDP EAKKKVERAL
801: AHIEMKTKES AYQAWLGYYN SNRSIGKDKY RLVELANEFS RTMGLDNPPA IPKLVLGKMG LKNIPGLRSK

Best Arabidopsis Sequence Match ( AT5G08610.1 )
(BLAST)

001: MSSKFPLGVR FITHSLPCTR LASMNSGALI YSFRSVPVLS KAFPFRLKYI GLGSRVNFST RPERSQPEFA RRSGAGGEIR ASKSLIEDEA ELSDWVSDLR
101: TSSLRGKFTS DEDNADPEVV RRNVDRDTSR GPRRGREGQS DRFGGAKRGK EGEMDRFGSP NRRRTSGEPA DSFGNKRLGD REGSRNGRVQ GKSSESSFRG
201: RSDRNVDSGS SFRGRSDKNV DSGSSFRGRN DRNVDSGSSF RGRSDRNVDS GSSFRGRSDR NVDSGSSFRG RNDRNVDSGS SFRGRNDRNV ESGFRREPGS
301: ENNRGLGKQT RGLSLEEEDS SDDDENRVGL GNIDDLPSED SSDEDDENDE PLIKKAASAK AVQTDKPTGE HVKTSDSYLS KTRFDQFPLS PLSLKAIKDA
401: GFETMTVVQE ATLPIILQGK DVLAKAKTGT GKTVAFLLPA IEAVIKSPPA SRDSRQPPII VLVVCPTREL ASQAAAEANT LLKYHPSIGV QVVIGGTKLP
501: TEQRRMQTNP CQILVATPGR LKDHIENTSG FATRLMGVKV LVLDEADHLL DMGFRRDIER IIAAVPKQRQ TFLFSATVPE EVRQICHVAL KRDHEFINCV
601: QEGSGETHQK VTQMYMIASL DRHFSLLHVL LKEHIADNVD YKVIIFCTTA MVTRLVADLL SQLSLNVREI HSRKPQSYRT RVSDEFRKSK AIILVTSDVS
701: ARGVDYPDVS LVVQMGLPSD REQYIHRLGR TGRKGKEGEG VLLLAPWEEY FMSSVKDLPI TKSPLPPIDP EAVKRVQKGL SQVEMKNKEA AYQAWLGYYK
801: SQKMIARDTT RLVELANEFS RSMGLDSPPA IPKNVLGKMG LKNVPGLRTK

Arabidopsis Description

RH26PDE340 [Source:UniProtKB/TrEMBL;Acc:A0A178UFQ6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.