Factsheet for Bra028652.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40740	Canola	cytosol	97.6	97.6
CDY44780	Canola	mitochondrion	95.38	89.27
Bra009356.1-P	Field mustard	cytosol	82.62	79.68
AT5G08620.1	Thale cress	nucleus	80.59	77.44
Os01t0618500-01	Rice	nucleus	59.15	59.7
HORVU3Hr1G054730.1	Barley	cytosol, mitochondrion, nucleus, plastid	58.41	58.74
TraesCS3D01G230300.1	Wheat	nucleus	58.41	58.74
TraesCS3A01G222500.1	Wheat	nucleus, plastid	58.41	58.74
TraesCS3B01G252700.2	Wheat	nucleus	51.2	58.07
EES03287	Sorghum	cytosol	58.6	56.51
Zm00001d044203_P001	Maize	plasma membrane	57.49	55.54
Bra009355.1-P	Field mustard	mitochondrion, plastid	77.82	55.25
EES01082	Sorghum	mitochondrion, plastid	59.7	54.93
Zm00001d044208_P001	Maize	plastid	59.33	54.78
Os01t0618400-01	Rice	nucleus, plasma membrane	59.7	54.38
TraesCS3B01G252600.1	Wheat	plastid	57.67	53.33
TraesCS3D01G230400.2	Wheat	mitochondrion	57.86	53.23
TraesCS3A01G222700.1	Wheat	mitochondrion	57.67	53.06
KRH47920	Soybean	nucleus	66.17	50.92
Bra038650.1-P	Field mustard	mitochondrion	69.87	50.87
OQU76491	Sorghum	nucleus	61.0	50.3
VIT_15s0046g01010.t01	Wine grape	plastid	68.02	47.85
GSMUA_Achr8P04210_001	Banana	cytosol	62.11	45.41
KRH06491	Soybean	nucleus	65.99	44.29
GSMUA_Achr10P...	Banana	mitochondrion	61.55	43.99
Solyc01g095740.2.1	Tomato	nucleus	66.17	41.15
PGSC0003DMT400000611	Potato	mitochondrion	66.17	41.1
Zm00001d046097_P001	Maize	mitochondrion	61.92	35.79
TraesCS7D01G328100.1	Wheat	mitochondrion	61.37	34.62
Os06t0526600-01	Rice	mitochondrion	58.6	34.34
TraesCS7A01G350700.1	Wheat	mitochondrion	61.18	34.19
TraesCS7B01G232200.1	Wheat	mitochondrion	61.0	34.06
Bra027808.1-P	Field mustard	mitochondrion	48.61	33.67
Bra029342.1-P	Field mustard	cytosol	23.84	28.54
Bra037574.1-P	Field mustard	nucleus	27.73	26.5
Bra022336.1-P	Field mustard	nucleus	27.73	26.41
Bra024428.1-P	Field mustard	nucleus	27.54	25.21
Bra001713.1-P	Field mustard	nucleus	27.73	24.75
Bra026724.1-P	Field mustard	nucleus	21.63	24.07
Bra009114.1-P	Field mustard	nucleus	26.06	23.7
Bra028757.1-P	Field mustard	nucleus	25.69	23.4
Bra004584.1-P	Field mustard	nucleus	25.32	22.31
Bra021205.1-P	Field mustard	mitochondrion, nucleus, plastid	23.66	20.35
Bra002946.1-P	Field mustard	nucleus	25.32	18.41
Bra040743.1-P	Field mustard	nucleus	25.14	15.56
Bra003691.1-P	Field mustard	cytosol	22.0	13.97
Bra038492.1-P	Field mustard	nucleus	21.26	12.67

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra028652	EnsemblPlants:Bra028652.1	EnsemblPlants:Bra028652.1-P	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M4EIN7	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF528	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI00025432CB
SEG:seg	:	:	:	:	:

Description

AT5G08620 (E=7e-237) STRS2, ATRH25 | STRS2 (STRESS RESPONSE SUPPRESSOR 2); ATP-dependent helicase/ RNA binding

Coordinates

chrA02:+:2692013..2694935

Molecular Weight (calculated)

60344.2 Da

IEP (calculated)

10.110

GRAVY (calculated)

-0.374

Length

541 amino acids

Sequence
(BLAST)

001: MNSDGSNSGR KRRKNADDSG NNRASKRGRE DKLAVDDSEP PVKKTASTKA TETTRIEHVE TSDSYLSNTR FDQFPLSPLS LKALEDAGFK TMTVVQEATL
101: PIILKGKDVL AKAKTGTGKT IAYLLPSIEA VIKSPPPAST DKKKPSIIVL VVCPTRELAC QAAAEAKTLL KYHSSIGVDV VIGGKKLRSE QRRMQKHPCR
201: ILVATPGRLI DHIDNTPGFA RRLRGVKVLV LDEADHLLDM GFRRDVERII SAVPKKRQTF LFSATVPEEV RQICHVALKQ DHEFVNCVQE GSDETHQKVT
301: QMYMVASLDR HFSLIYMLLK RHIAENVDYK VIIFCTTAMV TRMVADLLGQ LSLNVREINS RKPQGYRTRV SDEFRKSKCI ILVTSDVSSR GLDYPDVSLV
401: VQMGLPSDRK QYIHRLGRTG REDKEGEGVL LLAPWEEYFL SSVKDLPITK ASLPQTDPEA VKKVKKALRQ VDMKYKEAAY QAWLGYYTSQ KKIARDTTRL
501: VELANEFSRS MGLSIPPAIS ANVLDKMGLK NVPGLRVAPG S

Best Arabidopsis Sequence Match ( AT5G08620.1 )
(BLAST)

001: MNSDGPKSGK KRREIRAKLV KKLTSDEDGS GKLVKDNNKS LKRGREGKSD VDEPLIKKPA STTPLVTQIA KTSDSYLSKT RFDQFPLSPL TLKGIEDAGF
101: KTMTVVQEAT LPLILQGKDI LAKAKTGTGK TVAFLLPSIE AVIKAPPASR DNRHPPIIVL VVCPTRELAC QAAAEANILL KYHPSIGVQV VIGGTKLPTE
201: QRRLQKSPCQ ILVATPGRLK DHIDNTSGFA TRLMGVKVLV LDEADHLLDM GFRREIERII AAVPKQRQTF LFSATVSDEV RQICHVALKR DHEFVNCVQE
301: GAGETHQKVS QMYMIASLDR HFSLLYGLLK KHITDNVGYK VIIFCTTAMV TRLVADLLGK LSLNVREIHS RKPQSYRTRV SDEFRKSKSI ILVTSDVSAR
401: GVDYPDVSLV VQMGLPSDRE QYIHRLGRTG RKGKEGEGVL LLAPWEEYFL SSVKDLPITK SSLPPIDHEA VKKVQKGLIQ VEMTNKEAAY QAWLGYYKSQ
501: KKIARDTTRL VELANEFSRS MGLSIPPAIP VNILGKMGLK NVPGIRVAPG FDKKPAKRNY RSR

Arabidopsis Description

RH25DEAD-box ATP-dependent RNA helicase 25 [Source:UniProtKB/Swiss-Prot;Acc:Q94C75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.