Factsheet for Bra022336.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92251	Canola	nucleus	98.06	97.89
Bra037574.1-P	Field mustard	nucleus	92.08	92.4
Bra001713.1-P	Field mustard	nucleus	94.54	88.61
AT3G18600.1	Thale cress	nucleus	86.27	86.27
PGSC0003DMT400063252	Potato	nucleus	66.37	66.61
VIT_17s0000g04310.t01	Wine grape	cytosol	64.08	66.18
Solyc03g114370.2.1	Tomato	nucleus	65.67	65.9
GSMUA_Achr10P...	Banana	cytosol	59.33	65.18
KRH62970	Soybean	nucleus	61.62	64.58
KRH03838	Soybean	nucleus	64.44	63.65
KRH56711	Soybean	nucleus	63.73	63.29
KRH54795	Soybean	nucleus	60.92	63.25
Bra024428.1-P	Field mustard	nucleus	60.92	58.54
HORVU4Hr1G000640.1	Barley	cytosol, nucleus	49.65	56.74
GSMUA_Achr7P07500_001	Banana	cytosol, nucleus, peroxisome	55.11	56.09
TraesCS5D01G127000.1	Wheat	nucleus	56.51	55.34
TraesCS5B01G120400.1	Wheat	nucleus	56.51	55.34
TraesCS5A01G114200.1	Wheat	nucleus	56.51	55.34
TraesCS6D01G292400.1	Wheat	nucleus	53.52	54.97
Os03t0802700-01	Rice	nucleus	56.87	54.75
TraesCS6A01G312900.1	Wheat	nucleus	53.17	54.61
EER90714	Sorghum	nucleus	59.68	54.41
TraesCS6B01G342900.1	Wheat	nucleus	51.76	53.85
TraesCS5A01G042300.1	Wheat	nucleus	53.87	53.12
TraesCS5D01G050600.1	Wheat	nucleus	51.23	52.06
Os06t0535100-00	Rice	nucleus	53.17	51.89
OQU76528	Sorghum	nucleus	54.4	51.59
TraesCS6A01G356000.1	Wheat	nucleus	51.94	51.48
KXG37786	Sorghum	nucleus	40.67	50.99
Zm00001d013056_P001	Maize	nucleus	58.8	50.91
Zm00001d000431_P001	Maize	plastid	43.13	50.41
HORVU5Hr1G010160.3	Barley	cytosol	53.17	50.17
Zm00001d023501_P001	Maize	nucleus	52.11	49.09
TraesCS7B01G213800.1	Wheat	nucleus	24.82	45.63
TraesCS7A01G313300.1	Wheat	nucleus	24.82	45.63
TraesCS7D01G309800.1	Wheat	nucleus	24.65	44.87
Bra029342.1-P	Field mustard	cytosol	26.06	32.74
Bra004584.1-P	Field mustard	nucleus	32.22	29.8
Bra026724.1-P	Field mustard	nucleus	24.47	28.6
Bra028652.1-P	Field mustard	nucleus	26.41	27.73
Bra009114.1-P	Field mustard	nucleus	27.99	26.72
Bra028757.1-P	Field mustard	nucleus	27.82	26.6
Bra009356.1-P	Field mustard	cytosol	26.23	26.56
Bra002946.1-P	Field mustard	nucleus	34.51	26.34
Bra009355.1-P	Field mustard	mitochondrion, plastid	27.29	20.34
Bra038650.1-P	Field mustard	mitochondrion	26.58	20.32
Bra021205.1-P	Field mustard	mitochondrion, nucleus, plastid	21.48	19.4
Bra027808.1-P	Field mustard	mitochondrion	25.53	18.57
Bra003691.1-P	Field mustard	cytosol	25.0	16.67
Bra040743.1-P	Field mustard	nucleus	24.12	15.68
Bra038492.1-P	Field mustard	nucleus	21.65	13.55

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra022336	EnsemblPlants:Bra022336.1	EnsemblPlants:Bra022336.1-P	ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M4E0N9	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFAM:PF13959	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF305	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SMART:SM01178	SUPFAM:SSF52540	UniParc:UPI000254814F	SEG:seg	:

Description

AT3G18600 (E=5e-238) | DEAD/DEAH box helicase, putative

Coordinates

chrA05:+:18323060..18326184

Molecular Weight (calculated)

64092.6 Da

IEP (calculated)

9.831

GRAVY (calculated)

-0.482

Length

568 amino acids

Sequence
(BLAST)

001: MAKLEKKASD ELKKRVRKRN RGKKNDQQKA EEEEEETHKA EENVDEIQNK NEKKVKKVKK LQGRVKTDED EEEEKKMVVV GKGIMTNETF ESLDLSEQTF
101: EAIKVMGFEH MTQIQAGSIP PLLEGKDVLG AARTGSGKTL AFLIPAVELL FKERFSPRNG TGVIVICPTR ELAIQTKNVA EELLKHHSLT VSMVIGGNNR
201: RTEAQRIANG SNLLIATPGR LLDHLQHTKG FIYKHLKCLV IDEADRILEE NFEEDMNKIL KILPKTRQTA LFSATQTSKV QDLARVSLTS PVLVDVDDGR
301: RKVTNEGLEQ GYCVVPSEKR LLLLISFLKK NLNKKIMVFF STCKSVQFHA EIMKLINVES CDIHGGLDQN RRTKTFFDFM KAEKGILLCT DVAARGLDIP
401: AVDWIIQYDP PDKPTEYIHR VGRTARGEGA KGKALLVLIP EELQFIRYLK AAKVPVKELE FNEKKLLNVR SALEKYVAND YNLNKTAKDA YRAYIAAYNS
501: HSLKDIFNVH RLDLQAVALS FCFSSPPKVN LNIESGAGKV RKARNQQARN GFSPYSPYGK VKSTPKEA

Best Arabidopsis Sequence Match ( AT3G18600.1 )
(BLAST)

001: MVESDKSSVE ELKKRVRKRS RGKKNEQQKA EEKTHTVEEN ADETQKKSEK KVKKVRGKIE EEEEKVEAME DGEDEKNIVI VGKGIMTNVT FDSLDLSEQT
101: SIAIKEMGFQ YMTQIQAGSI QPLLEGKDVL GAARTGSGKT LAFLIPAVEL LFKERFSPRN GTGVIVICPT RELAIQTKNV AEELLKHHSQ TVSMVIGGNN
201: RRSEAQRIAS GSNLVIATPG RLLDHLQNTK AFIYKHLKCL VIDEADRILE ENFEEDMNKI LKILPKTRQT ALFSATQTSK VKDLARVSLT SPVHVDVDDG
301: RRKVTNEGLE QGYCVVPSKQ RLILLISFLK KNLNKKIMVF FSTCKSVQFH TEIMKISDVD VSDIHGGMDQ NRRTKTFFDF MKAKKGILLC TDVAARGLDI
401: PSVDWIIQYD PPDKPTEYIH RVGRTARGEG AKGKALLVLI PEELQFIRYL KAAKVPVKEL EFNEKRLSNV QSALEKCVAK DYNLNKLAKD AYRAYLSAYN
501: SHSLKDIFNV HRLDLLAVAE SFCFSSPPKV NLNIESGAGK VRKARKQQGR NGFSPYSPYG KSTPTKEA

Arabidopsis Description

RH51DEAD-box ATP-dependent RNA helicase 51 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIH9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.