Factsheet for TraesCS6A01G312900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	peroxisome
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G292400.1	Wheat	nucleus	96.75	96.75
TraesCS6B01G342900.1	Wheat	nucleus	92.04	93.22
TraesCS5A01G042300.1	Wheat	nucleus	82.82	79.51
TraesCS6A01G356000.1	Wheat	nucleus	79.39	76.61
OQU76528	Sorghum	nucleus	79.2	73.12
Zm00001d023501_P001	Maize	nucleus	78.84	72.31
TraesCS5A01G114200.1	Wheat	nucleus	71.43	68.1
GSMUA_Achr10P...	Banana	cytosol	61.48	65.76
Os06t0535100-00	Rice	nucleus	68.72	65.29
VIT_17s0000g04310.t01	Wine grape	cytosol	58.59	58.91
KRH62970	Soybean	nucleus	56.42	57.56
Solyc03g114370.2.1	Tomato	nucleus	58.77	57.42
GSMUA_Achr7P07500_001	Banana	cytosol, nucleus, peroxisome	57.87	57.35
PGSC0003DMT400063252	Potato	nucleus	58.23	56.89
KRH54795	Soybean	nucleus	55.7	56.31
KRH03838	Soybean	nucleus	58.05	55.83
KRH56711	Soybean	nucleus	57.69	55.77
TraesCS7A01G313300.1	Wheat	nucleus	30.02	53.72
Bra037574.1-P	Field mustard	nucleus	54.43	53.18
CDY18530	Canola	nucleus	54.61	53.17
Bra022336.1-P	Field mustard	nucleus	54.61	53.17
CDX92251	Canola	nucleus	54.61	53.08
CDX99342	Canola	nucleus	54.25	52.82
CDX95512	Canola	nucleus	54.43	52.81
CDX82336	Canola	nucleus	54.43	52.53
AT3G18600.1	Thale cress	nucleus	53.71	52.29
CDX75974	Canola	nucleus	54.43	51.72
CDY36514	Canola	nucleus	52.98	50.26
Bra024428.1-P	Field mustard	nucleus	53.35	49.92
Bra001713.1-P	Field mustard	nucleus	54.43	49.67
CDY08740	Canola	nucleus	53.35	49.66
AT5G65900.1	Thale cress	nucleus	51.72	45.18
TraesCS2A01G128700.1	Wheat	nucleus	24.77	29.91
TraesCS6A01G114900.1	Wheat	nucleus	24.41	29.54
TraesCS3A01G222500.1	Wheat	nucleus, plastid	28.03	28.81
TraesCS1A01G030500.1	Wheat	nucleus	30.74	27.78
TraesCS3A01G222700.1	Wheat	mitochondrion	27.67	26.02
TraesCS2A01G154800.1	Wheat	cytosol	23.69	25.69
TraesCS3A01G100100.1	Wheat	plastid	28.03	24.07
TraesCS2A01G222000.1	Wheat	mitochondrion, nucleus	30.74	22.4
TraesCS5A01G375900.1	Wheat	nucleus	24.23	17.22
TraesCS7A01G350700.1	Wheat	mitochondrion	29.66	16.94
TraesCS5A01G510500.1	Wheat	nucleus	24.77	16.08
TraesCS6A01G409100.1	Wheat	cytosol	25.32	15.8
TraesCS2A01G366700.1	Wheat	nucleus	21.34	13.98

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF13959
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF305
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SMART:SM01178	SUPFAM:SSF52540
EnsemblPlantsGene:TraesCS6A01G312900	EnsemblPlants:TraesCS6A01G312900.1	TIGR:cd00079	TIGR:cd00268	SEG:seg	:

Description

No Description!

Coordinates

chr6A:+:549531348..549535659

Molecular Weight (calculated)

63068.3 Da

IEP (calculated)

9.639

GRAVY (calculated)

-0.472

Length

553 amino acids

Sequence
(BLAST)

001: MVKSLLRPSM EEEEEKEENV MEGMRKRKRE EKGMDGMEEG EKKEQKGKGG GILTNELFSE LFVSELTAKA IREMNYTHLT QIQARSIPHL MVGDDVLGSA
101: RTGSGKTLAF LIPAIKLLHN ARFTPRNGTV VIVVCPTREL AIQTHDVAKK LMKYHSQTLG YVIGGTNMRS EANQLVKGVN LLVATPGRLL DHLKSTGGFN
201: YKGLKCLIID EADRILEQNF EEDMKQIFKR LPQNKQTVLF SATQTQRVED FANFTFGKKE ERQRKLVYVG VDDSELKPTV DGLQQGYCVI PSEKRFLVLY
301: TFLRKMQVMK QKVKVMVFFS SCSSVKFHAE FLNFIGIECH EIHGQLKQQK RTTTFFQFSK EESGILLCTN VAARGLDIPN VDYIVQYDPP DDPKDYIHRV
401: GRTARGDKGQ GRAFLFLLPE ELKLLIYLHA SNISLTEYEF SEKHVPKSQS KLEKIVAGNY FLNQSAKEAY RSYLLAYNSH SMKDIFDVHQ LDLKKVAASF
501: CFNSPPKVNL NLESSASRHR KMRKVDGRKR HELSPSNPYG RRGGCDHMDL ARF

Best Arabidopsis Sequence Match ( AT1G71370.1 )
(BLAST)

001: MDSSPPKTIT KALPRFSELK PPLSEDIIEA LDRSGFEVCT PVQAETIPFL CSHKDVVVDA ATGSGKTLAF LLPFIEIIRR SNSYPPKPHQ VMGVIISPTR
101: ELSAQIHKVA EPFVSTLPNV NSVLLVGGRE VEADMNTLEE EGANLLIGTP GRLSDMMKRM EFLDFRNLEI LILDEADRLL DMGFQKQVNY IISRLPKQRR
201: TGLFSATQTQ AVADLAKAGL RNAMEVISGA ESKSKTSSGL YCEYLKCEAD QKSSQLVHLL IENKNKKLVV FFMTCACVDY WGLVLSKIPT LKSISFFSTH
301: GKMDQKGRDT ALASFTEASS GVLLCTDVAA RGLDIPGIDY VVQYDPPQDP DVFIHRVGRT ARMERQGRAI VFLMPKETDY VEFMRIRRVP LQERKCSENA
401: SDVIPIIRSL AIKDRAVLEK GLQAFVSFVR AYKEHHCSYI FSWKGLEIGK LAMGYGILSF PYISEVKQDR IGIVGFTPVQ GITFEDIKYK NKSREKQRQQ
501: NLLARKDKLQ QEKRGKRKKS SKEAVDDSNK ASRKRKLTGR QRQTIQTAQD EEEMNLRL

Arabidopsis Description

RH49DEAD-box ATP-dependent RNA helicase 49 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXD6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.