Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G385400.1 | Wheat | nucleus | 97.81 | 97.81 |
| TraesCS5B01G378100.1 | Wheat | nucleus | 97.56 | 97.43 |
| HORVU5Hr1G093160.3 | Barley | nucleus | 96.4 | 90.25 |
| Os12t0481100-01 | Rice | nucleus | 82.78 | 80.3 |
| KXG35997 | Sorghum | nucleus | 80.21 | 78.59 |
| Zm00001d021127_P001 | Maize | nucleus, plasma membrane | 77.76 | 78.57 |
| Zm00001d006113_P001 | Maize | nucleus | 77.89 | 76.81 |
| GSMUA_Achr8P12970_001 | Banana | nucleus | 69.54 | 70.63 |
| KRH37970 | Soybean | cytosol | 28.02 | 68.12 |
| VIT_18s0001g14540.t01 | Wine grape | nucleus | 63.62 | 67.62 |
| KRH37947 | Soybean | plastid | 51.16 | 67.57 |
| Solyc04g081580.2.1 | Tomato | nucleus | 63.5 | 66.4 |
| PGSC0003DMT400025551 | Potato | nucleus | 63.37 | 66.17 |
| KRH46113 | Soybean | nucleus | 64.27 | 66.05 |
| KRG98832 | Soybean | nucleus | 63.75 | 65.35 |
| AT4G16630.1 | Thale cress | nucleus | 60.54 | 59.7 |
| CDY40519 | Canola | nucleus | 57.33 | 58.84 |
| CDY50846 | Canola | nucleus | 60.03 | 55.66 |
| CDY53643 | Canola | nucleus | 60.15 | 55.45 |
| Bra040743.1-P | Field mustard | nucleus | 60.15 | 53.55 |
| Bra038492.1-P | Field mustard | nucleus | 55.27 | 47.36 |
| CDY32273 | Canola | nucleus | 55.27 | 47.1 |
| TraesCS6A01G114900.1 | Wheat | nucleus | 19.15 | 32.6 |
| TraesCS2A01G128700.1 | Wheat | nucleus | 18.89 | 32.1 |
| TraesCS2A01G154800.1 | Wheat | cytosol | 19.02 | 29.02 |
| TraesCS3A01G222500.1 | Wheat | nucleus, plastid | 17.74 | 25.65 |
| TraesCS5A01G042300.1 | Wheat | nucleus | 18.64 | 25.17 |
| TraesCS6A01G356000.1 | Wheat | nucleus | 18.51 | 25.13 |
| TraesCS5A01G114200.1 | Wheat | nucleus | 18.51 | 24.83 |
| TraesCS6A01G312900.1 | Wheat | nucleus | 17.22 | 24.23 |
| TraesCS1A01G030500.1 | Wheat | nucleus | 18.51 | 23.53 |
| TraesCS3A01G100100.1 | Wheat | plastid | 19.41 | 23.45 |
| TraesCS3A01G222700.1 | Wheat | mitochondrion | 16.58 | 21.94 |
| TraesCS2A01G366700.1 | Wheat | nucleus | 21.59 | 19.91 |
| TraesCS5A01G510500.1 | Wheat | nucleus | 20.95 | 19.13 |
| TraesCS2A01G222000.1 | Wheat | mitochondrion, nucleus | 18.12 | 18.58 |
| TraesCS7A01G313300.1 | Wheat | nucleus | 6.43 | 16.18 |
| TraesCS6A01G409100.1 | Wheat | cytosol | 18.38 | 16.14 |
| TraesCS7A01G350700.1 | Wheat | mitochondrion | 19.41 | 15.6 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 |
| PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF541 | InterPro:RNA-helicase_DEAD-box_CS |
| InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS5A01G375900 | EnsemblPlants:TraesCS5A01G375900.1 |
| TIGR:cd00079 | TIGR:cd00268 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr5A:-:573673594..573676162
Molecular Weight (calculated)
86578.6 Da
IEP (calculated)
5.577
GRAVY (calculated)
-0.677
Length
778 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPDFRFDPD GSDDEAPAGA AVRRKPAQSP WEFSTYAESV AAEHAARRTT SIDEKISQAL RGRRNPSMPD GSEDEEEEDA DDDSDEEAAV KGESGDDEDE
101: IEESGDDDEE IESSGGEEDG EVEAGEQGEG EEAGGEEEEE EAVQEEDDAP EQPDPSQFFA SSEGASFSAR SFLELNLSRP LIRACEALGY QKPTPIQAAC
201: IPLALTGRDI CGSAITGSGK TAAFSLPVLE RLLFRPKRVP AIRVLILTPT RELAAQVHSM IEKLAQFTDI RCCLIVGGLP TKAQEVALRS NPDIVVATPG
301: RIVDHLRNSL SVGLEDLAVL ILDEADRLLE LGFSVEIGEL IRMCPKRRQT MLFSATMTEQ IDELVKLSLN KPVRLEADPS LKRPATLTEE VVRIRRSREA
401: TQEAVLLALC LKTFKERVII FSGTKHSAHR LKILFGLSGI KAAELHGNLT QAQRLEALEQ FKKQEADILI ATDIAARGID IVGVRTVINF ACPRDVKTYL
501: HRVGRTARAG REGYAVTFVT DDDRSLLKAI AKKAGSQLKS RIVAEKPVSD CAKLIEQLEH QISNIILEER EEMALRKAEM EATKAENMIA HRDEIYSRPK
601: RTWFATEKEK KLLAKAAKES LDQVKGGSVV VSAQQAEDLR LKEKRRRERE KNLPRKKRRK LEAQREMLEE EKEEEEAQES KGGKKAKSSQ SVVDVAYRRA
701: KSMKATGKIG VRASKGKNEK GSKQPAEKGQ TRQEEMHELF QNDMSEWKQG RSLKKKDSSF AKKSKNAFKS KSRYKRRK
101: IEESGDDDEE IESSGGEEDG EVEAGEQGEG EEAGGEEEEE EAVQEEDDAP EQPDPSQFFA SSEGASFSAR SFLELNLSRP LIRACEALGY QKPTPIQAAC
201: IPLALTGRDI CGSAITGSGK TAAFSLPVLE RLLFRPKRVP AIRVLILTPT RELAAQVHSM IEKLAQFTDI RCCLIVGGLP TKAQEVALRS NPDIVVATPG
301: RIVDHLRNSL SVGLEDLAVL ILDEADRLLE LGFSVEIGEL IRMCPKRRQT MLFSATMTEQ IDELVKLSLN KPVRLEADPS LKRPATLTEE VVRIRRSREA
401: TQEAVLLALC LKTFKERVII FSGTKHSAHR LKILFGLSGI KAAELHGNLT QAQRLEALEQ FKKQEADILI ATDIAARGID IVGVRTVINF ACPRDVKTYL
501: HRVGRTARAG REGYAVTFVT DDDRSLLKAI AKKAGSQLKS RIVAEKPVSD CAKLIEQLEH QISNIILEER EEMALRKAEM EATKAENMIA HRDEIYSRPK
601: RTWFATEKEK KLLAKAAKES LDQVKGGSVV VSAQQAEDLR LKEKRRRERE KNLPRKKRRK LEAQREMLEE EKEEEEAQES KGGKKAKSSQ SVVDVAYRRA
701: KSMKATGKIG VRASKGKNEK GSKQPAEKGQ TRQEEMHELF QNDMSEWKQG RSLKKKDSSF AKKSKNAFKS KSRYKRRK
001: MPSSFFFEDA SDDELELIRN QEDSSEEDVK EGEAEEHEAG EDEDGEEEYE EEDDDEEEED EKRKRDADAQ SPWDFASYSS SVGEEHARRH TTSIDEKISK
101: AIQHRPVPIS INEEEEEEEE EEDASDAETD KQEEYLSEDD EAAEYKPEDA TPKPFFSTVD GVSFHADTFM ELNLSRPLLR ACETLGYKKP TPIQAACIPL
201: ALTGRDLCAS AITGSGKTAA FALPTLERLL FRPKRVFATR VLILTPTREL AVQIHSMIQN LAQFTDIKCG LIVGGLSVRE QEVVLRSMPD IVVATPGRMI
301: DHLRNSMSVD LDDLAVLILD EADRLLQTGF ATEITELVRL CPKRRQTMLF SATMTEEVKE LVKLSLNKPL RLSADPSARR PPGLTEEVVR IRRTREANQE
401: AVLLSLCTRT FKSKVIIFSG TKQAAHRLKI LFGLAGLKAA ELHGNLTQAQ RLDSLELFRK QEVDFLIATD VAARGLDIIG VQTVINYACP REIDSYVHRV
501: GRTARAGREG YAVTFVTDSD RSLLKVIAKK VGSKLKSRVI PEQSIVKWSQ IIDEMEDQYS AVISAERDER ALRKAEMEFA KAENMLEHRD EIYARPKRTW
601: FMTEKEKKLV AQAEKDSAGN PAGGELVSAD RAEDLKMKEK RKREREKNLP RKKRRKLEAA REMLEDNEGE EEEEDEEGDE KRGRSRGKDK KKQETDKKGL
701: TLKDLGYMRA KAVKAKQRAI DSGKMERPKP DKKQSRSKPR NQPRGEEMKD LFKSDMGEKK QGRGGAAAAA KPRTKSKNSF KSKARYKRR
101: AIQHRPVPIS INEEEEEEEE EEDASDAETD KQEEYLSEDD EAAEYKPEDA TPKPFFSTVD GVSFHADTFM ELNLSRPLLR ACETLGYKKP TPIQAACIPL
201: ALTGRDLCAS AITGSGKTAA FALPTLERLL FRPKRVFATR VLILTPTREL AVQIHSMIQN LAQFTDIKCG LIVGGLSVRE QEVVLRSMPD IVVATPGRMI
301: DHLRNSMSVD LDDLAVLILD EADRLLQTGF ATEITELVRL CPKRRQTMLF SATMTEEVKE LVKLSLNKPL RLSADPSARR PPGLTEEVVR IRRTREANQE
401: AVLLSLCTRT FKSKVIIFSG TKQAAHRLKI LFGLAGLKAA ELHGNLTQAQ RLDSLELFRK QEVDFLIATD VAARGLDIIG VQTVINYACP REIDSYVHRV
501: GRTARAGREG YAVTFVTDSD RSLLKVIAKK VGSKLKSRVI PEQSIVKWSQ IIDEMEDQYS AVISAERDER ALRKAEMEFA KAENMLEHRD EIYARPKRTW
601: FMTEKEKKLV AQAEKDSAGN PAGGELVSAD RAEDLKMKEK RKREREKNLP RKKRRKLEAA REMLEDNEGE EEEEDEEGDE KRGRSRGKDK KKQETDKKGL
701: TLKDLGYMRA KAVKAKQRAI DSGKMERPKP DKKQSRSKPR NQPRGEEMKD LFKSDMGEKK QGRGGAAAAA KPRTKSKNSF KSKARYKRR
Arabidopsis Description
RH28DEAD-box ATP-dependent RNA helicase 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZRZ8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.