CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
endoplasmic reticulum: 23041469
nucleus: 27291164

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98832	Soybean	nucleus	97.09	96.84
KRH37970	Soybean	cytosol	40.55	95.94
KRH37947	Soybean	plastid	71.2	91.51
VIT_18s0001g14540.t01	Wine grape	nucleus	76.35	78.96
Solyc04g081580.2.1	Tomato	nucleus	74.24	75.54
PGSC0003DMT400025551	Potato	nucleus	73.98	75.17
GSMUA_Achr8P12970_001	Banana	nucleus	69.88	69.06
Zm00001d021127_P001	Maize	nucleus, plasma membrane	66.84	65.71
CDY40519	Canola	nucleus	65.79	65.7
TraesCS5D01G385400.1	Wheat	nucleus	66.45	64.65
AT4G16630.1	Thale cress	nucleus	67.37	64.64
TraesCS5B01G378100.1	Wheat	nucleus	66.45	64.57
TraesCS5A01G375900.1	Wheat	nucleus	66.05	64.27
KXG35997	Sorghum	nucleus	67.24	64.11
Os12t0481100-01	Rice	nucleus	67.5	63.72
Zm00001d006113_P001	Maize	nucleus	66.05	63.37
CDY50846	Canola	nucleus	68.82	62.1
CDY53643	Canola	nucleus	68.96	61.85
HORVU5Hr1G093160.3	Barley	nucleus	66.31	60.41
Bra040743.1-P	Field mustard	nucleus	68.96	59.73
Bra038492.1-P	Field mustard	nucleus	63.14	52.64
CDY32273	Canola	nucleus	63.14	52.35
KRH65120	Soybean	cytosol	20.21	34.85
KRH48210	Soybean	nucleus	12.81	30.31
KRG97683	Soybean	nucleus	21.14	27.16
KRH12590	Soybean	nucleus	18.76	26.15
KRH43700	Soybean	cytosol	20.21	26.11
KRH13749	Soybean	cytosol, plastid	20.21	25.89
KRH37539	Soybean	nucleus	18.23	25.6
KRH56711	Soybean	nucleus	19.29	25.52
KRH62970	Soybean	nucleus	18.23	25.46
KRH54795	Soybean	nucleus	18.36	25.41
KRH03838	Soybean	nucleus	18.76	24.7
KRH31184	Soybean	nucleus	21.27	24.21
KRH54980	Soybean	nucleus	5.15	21.91
KRH09570	Soybean	nucleus	22.32	21.75
KRH64859	Soybean	nucleus	22.19	21.62
KRH47920	Soybean	nucleus	19.82	21.34
KRH41139	Soybean	nucleus	19.42	20.79
KRH48208	Soybean	nucleus	21.8	20.37
KRH65117	Soybean	plastid	20.87	19.17
KRH06491	Soybean	nucleus	20.08	18.86
KRH73730	Soybean	nucleus	18.49	18.77
KRH59841	Soybean	nucleus	13.08	18.71
KRH14417	Soybean	cytosol, nucleus	11.89	17.05

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A0R0IVA1	EMBL:ACUP02005320	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
EnsemblPlantsGene:GLYMA_08G313100	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:KRH46113	ProteinID:KRH46113	ProteinID:KRH46113.1	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF541	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI00023BCA86	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:43276921..43285938

Molecular Weight (calculated)

85188.0 Da

IEP (calculated)

9.400

GRAVY (calculated)

-0.688

Length

757 amino acids

Sequence
(BLAST)

001: MSPSFVFDPP SDEEIEHSEH EEEEEEESVG EPESGSESES EGEGGEVEEG HKEARVPKKK KKKTQSPWDF AKYTESVAEE HARRSTTSVD EKISKALKQR
101: STPLVAELDH SSESEPDEQE DYRPEEEDEE EGNDGDIKSF FAPSGGTSFH ADSFLQLNLS RPLLRACEAL GYSKPTPIQA ACIPLALSGR DICGSAITGS
201: GKTAAFALPT LERLLFRPKR MRAIRVLILT PTRELAVQVH SMIEKLAQFT DIRCCLVVGG LSTKVQEAAL RTMPDIVVAT PGRMIDHLRN AMSVDLDDLA
301: VLILDEADRL LELGFSAEIQ ELVRLCPKKR QTMLFSATMT EEVDELIKLS LSKPLRLSAD PSTKRPATLT EEVVRIRRMR EVNQEAVLLA MCSKTFTSKV
401: IIFSGTKQAA HRLKIIFGLA GLKAAELHGN LTQAQRLEAL EQFRKQQVDF LVATDVAARG LDIIGVQTVI NFACPRDLTS YVHRVGRTAR AGREGYAVTF
501: VTDNDRSLLK AIAKRAGSKL KSRIVAEQSI HKWSHIIEQM EDQISEVLHE EREERVLRKA EMEATKAENM IAHREEIFSR PKRTWFVTEK EKKLAAKASK
601: ASMDKCKSSG KEVISAEQAE DLRMKEKRKR EREKHLPRKK RRKLEAAREM LEEEEDDKQV ETKGGNKKEK GGMSLVDLAY RRAKAVKAVK KALDSGKIVE
701: KNKKKSNNNS RKTPSRTEEM RELFQTDMKD KKSKRRGVGG GKKSKSSFKS KSRYKRK

Best Arabidopsis Sequence Match ( AT4G16630.1 )
(BLAST)

001: MPSSFFFEDA SDDELELIRN QEDSSEEDVK EGEAEEHEAG EDEDGEEEYE EEDDDEEEED EKRKRDADAQ SPWDFASYSS SVGEEHARRH TTSIDEKISK
101: AIQHRPVPIS INEEEEEEEE EEDASDAETD KQEEYLSEDD EAAEYKPEDA TPKPFFSTVD GVSFHADTFM ELNLSRPLLR ACETLGYKKP TPIQAACIPL
201: ALTGRDLCAS AITGSGKTAA FALPTLERLL FRPKRVFATR VLILTPTREL AVQIHSMIQN LAQFTDIKCG LIVGGLSVRE QEVVLRSMPD IVVATPGRMI
301: DHLRNSMSVD LDDLAVLILD EADRLLQTGF ATEITELVRL CPKRRQTMLF SATMTEEVKE LVKLSLNKPL RLSADPSARR PPGLTEEVVR IRRTREANQE
401: AVLLSLCTRT FKSKVIIFSG TKQAAHRLKI LFGLAGLKAA ELHGNLTQAQ RLDSLELFRK QEVDFLIATD VAARGLDIIG VQTVINYACP REIDSYVHRV
501: GRTARAGREG YAVTFVTDSD RSLLKVIAKK VGSKLKSRVI PEQSIVKWSQ IIDEMEDQYS AVISAERDER ALRKAEMEFA KAENMLEHRD EIYARPKRTW
601: FMTEKEKKLV AQAEKDSAGN PAGGELVSAD RAEDLKMKEK RKREREKNLP RKKRRKLEAA REMLEDNEGE EEEEDEEGDE KRGRSRGKDK KKQETDKKGL
701: TLKDLGYMRA KAVKAKQRAI DSGKMERPKP DKKQSRSKPR NQPRGEEMKD LFKSDMGEKK QGRGGAAAAA KPRTKSKNSF KSKARYKRR

Arabidopsis Description

RH28DEAD-box ATP-dependent RNA helicase 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZRZ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.