CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH12590	Soybean	nucleus	86.64	86.0
VIT_11s0016g00630.t01	Wine grape	nucleus	74.21	66.67
PGSC0003DMT400006153	Potato	nucleus	63.45	64.04
PGSC0003DMT400006154	Potato	nucleus	70.87	63.99
Solyc07g042270.2.1	Tomato	nucleus	70.5	63.65
AT2G40700.1	Thale cress	nucleus	66.6	58.85
Bra004584.1-P	Field mustard	nucleus	66.79	58.63
GSMUA_Achr7P18160_001	Banana	nucleus	63.27	58.39
Os05t0110500-02	Rice	nucleus	62.34	56.85
EES18259	Sorghum	nucleus	63.08	56.67
TraesCS1D01G031400.1	Wheat	nucleus	62.52	55.07
TraesCS1A01G030500.1	Wheat	nucleus	62.52	55.07
TraesCS1B01G037600.1	Wheat	nucleus	62.71	54.87
Zm00001d010225_P001	Maize	plasma membrane	52.13	54.67
CDX79974	Canola	nucleus	66.98	52.47
CDY23886	Canola	plasma membrane	66.79	51.36
HORVU1Hr1G004510.5	Barley	plastid	62.15	50.76
KRH65120	Soybean	cytosol	26.35	32.35
KRH62970	Soybean	nucleus	32.28	32.1
KRH54795	Soybean	nucleus	31.91	31.44
KRH56711	Soybean	nucleus	31.91	30.07
KRH48210	Soybean	nucleus	17.81	30.0
KRH03838	Soybean	nucleus	31.73	29.74
KRH37970	Soybean	cytosol	15.77	26.56
KRG97683	Soybean	nucleus	25.23	23.09
KRH43700	Soybean	cytosol	24.12	22.18
KRH13749	Soybean	cytosol, plastid	24.3	22.17
KRH31184	Soybean	nucleus	25.42	20.6
KRH73730	Soybean	nucleus	27.27	19.71
KRH37947	Soybean	plastid	21.34	19.52
KRH47920	Soybean	nucleus	24.68	18.92
KRH41139	Soybean	nucleus	24.12	18.39
KRH46113	Soybean	nucleus	25.6	18.23
KRG98832	Soybean	nucleus	25.42	18.05
KRH14417	Soybean	cytosol, nucleus	17.44	17.8
KRH09570	Soybean	nucleus	24.3	16.86
KRH64859	Soybean	nucleus	24.3	16.86
KRH59841	Soybean	nucleus	16.33	16.64
KRH06491	Soybean	nucleus	24.68	16.5
KRH54980	Soybean	nucleus	4.82	14.61
KRH48208	Soybean	nucleus	21.89	14.57
KRH65117	Soybean	plastid	20.78	13.59

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02005462	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_09G072400	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	UniProt:I1L1T5	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	EnsemblPlants:KRH37539	ProteinID:KRH37539	ProteinID:KRH37539.1	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF89	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI00023CB849	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:7516377..7522677

Molecular Weight (calculated)

61004.8 Da

IEP (calculated)

9.094

GRAVY (calculated)

-0.283

Length

539 amino acids

Sequence
(BLAST)

001: MGAKKQSQGV KNKGNGANND VFASCSFSSL GLDSNLCEQL RDRLGFEVPT LVQAQAIPVI LSGRHALVNA ATGTGKTVAY LAPIIHHLQG YENRIQRSDG
101: TFALVLVPTR ELCLQVYEIL QKLLHRFHWI VPGYIMGGEK RSKEKSRLRK GISILIATPG RLLDHLKNTT AFLYSNLRWI IFDEADRILE LGFGKDIEEI
201: LDLLGSRKKG HGDQENTVLT HSKIQRQNLL LSATLNEKVN HLAKMSLDNP VMIGLDGKKM EPISTIKRLD SSESDEDSED KYSSKVPTVG DYKVPIQLIQ
301: RYMKVPCGSR LPVLLSILKH LFEREPSQKV VLFFSTCDAV DFHYSLLSEF QFSSYPQTEG VRQVFLGCKT FRLHGNMQQE DRRTSFQAFK TEKSALLLST
401: DVSARGLDFP KVRCIIQYDS PGEATEYVHR VGRTARLGER GESLLFLQPV EIDYLQDLEK HGVSLTEYPV LKVLDSFPLQ KNHTKKSVFL ESHPWVLCLQ
501: KALEAFIMSK PEMDEHARKA FCSWVRAYTA HRGELKRIL

Best Arabidopsis Sequence Match ( AT2G40700.1 )
(BLAST)

001: MMKRAQQSAR ETKQEAKDAS KAKSGLFASC SFSSLGLDTK LSDQLKERMG FEAPTLVQAQ AIPVILSGRD VLVNAPTGTG KTIAYLAPLI HHLQGHSPKV
101: DRSHGTFALV IVPTRELCLQ VYETLEKLLH RFHWIVPGYV MGGEKKAKEK ARLRKGISIL IATPGRLLDH LKNTASFVHK NLRWVIFDEA DSILELGYGK
201: EIEQIIKLLG SGQNEQGEED DIVPKGIQKQ NLLLSATLND KVNDLAKLSL DDPVMIGLDN TKLQQNLSIE SPAAPDSDAE DMVIHVNKSA NPLSEDYGIP
301: SQLVQRYLRV PCGARLVALL SVLKNLFERE ASQKVVVFFS TRDAVDFHYS LLSEFQWPPN SETEEEGTKE LFLKCKTFRL HGSMEQEDRR SAFGTFKTEK
401: QAVLLSTDVA ARGLDFPKVR CIIQYDCPGE ATEYVHRVGR TARIGEKGEA LLFLQPIEID YLKELKKHGA SLTEYPLMKV LDKFPIPGNM PRIKKVLSLE
501: SHPWVISLQR ALESLTYAEP KMKSLAKNAF VSWVRGYAAH KGELKSIFVV KKLHLGHVAK SFALREQPSL VGKSHHKETM KRKRDERQKG QQGKKRKKMS
601: GTGNRSTQKT

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT2G40700]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.