Factsheet for PGSC0003DMT400006153

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006154	Potato	nucleus	99.25	88.78
Solyc07g042270.2.1	Tomato	nucleus	97.19	86.93
KRH12590	Soybean	nucleus	67.04	65.93
VIT_11s0016g00630.t01	Wine grape	nucleus	72.66	64.67
KRH37539	Soybean	nucleus	64.04	63.45
Os05t0110500-02	Rice	nucleus	63.86	57.7
Zm00001d010225_P001	Maize	plasma membrane	55.43	57.59
GSMUA_Achr7P18160_001	Banana	nucleus	62.73	57.36
AT2G40700.1	Thale cress	nucleus	64.61	56.56
Bra004584.1-P	Field mustard	nucleus	64.79	56.35
EES18259	Sorghum	nucleus	62.92	56.0
TraesCS1D01G031400.1	Wheat	nucleus	63.11	55.07
TraesCS1A01G030500.1	Wheat	nucleus	62.55	54.58
TraesCS1B01G037600.1	Wheat	nucleus	62.55	54.22
HORVU1Hr1G004510.5	Barley	plastid	63.11	51.06
CDX79974	Canola	nucleus	64.79	50.29
CDY23886	Canola	plasma membrane	64.98	49.5
PGSC0003DMT400063252	Potato	nucleus	30.71	28.98
PGSC0003DMT400029241	Potato	cytosol	21.54	23.61
PGSC0003DMT400057606	Potato	nucleus	23.41	20.06
PGSC0003DMT400057202	Potato	nucleus	25.47	18.01
PGSC0003DMT400025551	Potato	nucleus	24.72	17.72
PGSC0003DMT400010896	Potato	cytosol, nucleus, plastid	23.41	15.51
PGSC0003DMT400000611	Potato	mitochondrion	24.53	15.04
PGSC0003DMT400003801	Potato	nucleus	22.1	14.81

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	UniProt:M0ZQX2
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF13959	EnsemblPlantsGene:PGSC0003DMG402002393	PGSC:PGSC0003DMG402002393
EnsemblPlants:PGSC0003DMT400006153	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF89
InterPro:RNA-helicase_DEAD-box_CS	SMART:SM00487	SMART:SM00490	SMART:SM01178	SUPFAM:SSF52540	UniParc:UPI000296617A

Description

Dead box ATP-dependent RNA helicase [Source:PGSC_GENE;Acc:PGSC0003DMG402002393]

Coordinates

chr7:-:40053077..40059448

Molecular Weight (calculated)

60795.0 Da

IEP (calculated)

10.138

GRAVY (calculated)

-0.379

Length

534 amino acids

Sequence
(BLAST)

001: MNGDRLVNAA TGTGKTVAYL APVIHQLQKC DPRIQRSDGT FALVLVPTHE LCMQVYEILQ KLLHRFHWIV PGYIMGGESR NKEKARLRKG ISILVATPGR
101: LLDHLKNTSS FSYTNLRWII FDEADRILEL GYGKEIEDIL NILGSKQQKS VGKGNTTSQI SEVQRQNVLL SATLNEKVNH LAEISLDNPV MVGLDKKIEL
201: QLTHQDSKPM EFNGNDILEK DGKPLSSSTE EYKLPAQLLQ RYIKVPCGSR LVVLLAILKH LFEKEPSQKV VVFFSTCDAV DFHYSLVSGF QWLSRQQSDT
301: DVKQLFLKCN TLRLHGNMNH EDRRTTFHAF KTEKSALLLS TDVAARGLDF PKVRCIIQYD PPGEATEYVH RVGRTARIGE KGDSLLFLQP VETDYLPGLE
401: KHGVMLTEYP LQKLLDSFPL FGMRYHPKNF VSVDTHPWVV SLQKALESFT SSELKMKKMA QNAFCSWVRA YTAHRGELKG IFMVKKLHLG HVARSFALKE
501: QPSLVNKSLQ KQTKKRMRDQ KQKNVSKKRK VGKR

Best Arabidopsis Sequence Match ( AT2G40700.1 )
(BLAST)

001: MMKRAQQSAR ETKQEAKDAS KAKSGLFASC SFSSLGLDTK LSDQLKERMG FEAPTLVQAQ AIPVILSGRD VLVNAPTGTG KTIAYLAPLI HHLQGHSPKV
101: DRSHGTFALV IVPTRELCLQ VYETLEKLLH RFHWIVPGYV MGGEKKAKEK ARLRKGISIL IATPGRLLDH LKNTASFVHK NLRWVIFDEA DSILELGYGK
201: EIEQIIKLLG SGQNEQGEED DIVPKGIQKQ NLLLSATLND KVNDLAKLSL DDPVMIGLDN TKLQQNLSIE SPAAPDSDAE DMVIHVNKSA NPLSEDYGIP
301: SQLVQRYLRV PCGARLVALL SVLKNLFERE ASQKVVVFFS TRDAVDFHYS LLSEFQWPPN SETEEEGTKE LFLKCKTFRL HGSMEQEDRR SAFGTFKTEK
401: QAVLLSTDVA ARGLDFPKVR CIIQYDCPGE ATEYVHRVGR TARIGEKGEA LLFLQPIEID YLKELKKHGA SLTEYPLMKV LDKFPIPGNM PRIKKVLSLE
501: SHPWVISLQR ALESLTYAEP KMKSLAKNAF VSWVRGYAAH KGELKSIFVV KKLHLGHVAK SFALREQPSL VGKSHHKETM KRKRDERQKG QQGKKRKKMS
601: GTGNRSTQKT

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT2G40700]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.