CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

plasma membrane: 26746009

msms PMID: 26746009 doi

S Chen, Y Luo, G Ding, F Xu

National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China. Electronic address: fangsenxu@mail.hzau.edu.cn., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China; Key Laboratory of Agricultural Biotechnology of Liaoning Province, College of Biological Science and Technology, Shenyang Agricultural University, Shenyang 110866, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004584.1-P	Field mustard	nucleus	85.16	97.23
CDX79974	Canola	nucleus	92.3	94.04
AT2G40700.1	Thale cress	nucleus	77.18	88.69
KRH12590	Soybean	nucleus	53.64	69.24
VIT_11s0016g00630.t01	Wine grape	nucleus	57.77	67.5
KRH37539	Soybean	nucleus	51.36	66.79
PGSC0003DMT400006153	Potato	nucleus	49.5	64.98
Solyc07g042270.2.1	Tomato	nucleus	54.92	64.49
PGSC0003DMT400006154	Potato	nucleus	54.64	64.15
GSMUA_Achr7P18160_001	Banana	nucleus	50.5	60.62
EES18259	Sorghum	nucleus	51.21	59.83
Os05t0110500-02	Rice	nucleus	50.21	59.56
Zm00001d010225_P001	Maize	plasma membrane	42.8	58.37
TraesCS1A01G030500.1	Wheat	nucleus	50.64	58.01
TraesCS1B01G037600.1	Wheat	nucleus	50.93	57.95
TraesCS1D01G031400.1	Wheat	nucleus	50.5	57.84
HORVU1Hr1G004510.5	Barley	plastid	50.78	53.94
CDX92251	Canola	nucleus	25.96	31.99
CDY36514	Canola	nucleus	26.39	31.73
CDX99342	Canola	nucleus	25.68	31.69
CDY18530	Canola	nucleus	25.68	31.69
CDX82336	Canola	nucleus	25.82	31.59
CDX95512	Canola	nucleus	25.68	31.58
CDX75974	Canola	nucleus	25.96	31.27
CDY08740	Canola	nucleus	26.39	31.14
CDY42845	Canola	cytosol	19.83	30.96
CDY47007	Canola	cytosol	19.69	30.73
CDX81759	Canola	cytosol	19.4	27.87
CDY52844	Canola	cytosol	19.26	27.72
CDY40740	Canola	cytosol	19.4	25.14
CDY04952	Canola	nucleus	20.26	23.91
CDY14112	Canola	cytosol	20.26	23.91
CDY44780	Canola	mitochondrion	19.69	23.88
CDX70149	Canola	nucleus	19.69	23.08
CDY17287	Canola	nucleus	21.26	22.78
CDX96202	Canola	cytosol	8.84	22.3
CDX69933	Canola	cytosol	4.28	22.06
CDX84428	Canola	mitochondrion	20.68	20.51
CDY41525	Canola	mitochondrion	20.68	20.39
CDY40519	Canola	nucleus	20.97	19.39
CDY50846	Canola	nucleus	21.11	17.64
CDY53643	Canola	nucleus	21.11	17.54
CDX79187	Canola	cytosol	20.11	16.63
CDX68066	Canola	cytosol	20.11	16.55
CDY49890	Canola	mitochondrion	18.12	16.28
CDY45370	Canola	mitochondrion	17.97	16.11
CDY52719	Canola	nucleus, plastid	18.97	16.04
CDY32273	Canola	nucleus	20.68	15.88
CDY34979	Canola	nucleus, plastid	18.83	15.87
CDY21554	Canola	mitochondrion	19.83	10.23
CDX69935	Canola	mitochondrion	19.97	10.15

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078GES0	UniProt:A0A078GES0	EnsemblPlants:CDY23886	ProteinID:CDY23886
ProteinID:CDY23886.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00024322001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF13959	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF54	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SMART:SM01178	SUPFAM:SSF52540	UniParc:UPI0004EE1345	SEG:seg	:

Description

BnaC04g01510DBnaC04g01510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GES0]

Coordinates

chrLK032150:-:504996..508546

Molecular Weight (calculated)

78318.1 Da

IEP (calculated)

8.067

GRAVY (calculated)

-0.408

Length

701 amino acids

Sequence
(BLAST)

001: MFKRTQQTAR ETKQEAKDVT KSKNGLFASC SFSSLGLDPK LSDQLQERMG FEAPTLVQAQ SIPVILSGRD VLVNAATGTG KTIAYLAPII HHLQAYSPKV
101: DRSHGTFALV IVPTRELCLQ VYETLEKLLH RFHWIVPGYV MGGEKKAKEK ARLRKGISIL IATPGRLLDH LKNTASFEHK NLRWVIFDEA DCILEMGYGK
201: ETEQIIKLLG SRQHEEGEED DDDDIVVPKG AQKQTLLLSA TLNEKVNHLA KLSLDDPVMI GLDNSKLQQK QLPIESHASP DSDEDEMVIH VNKSANPSSE
301: DYGIPSQLVQ KYVKVPCGAR LVALLSVLKN LFEREASQKV VVFFSTRDAV DFHHSLLSEF QWPPKSETQE EEAATKQLFL KCKTFRLHGS MEQEDRRSAF
401: ANFKAEKQAL LLSTDVAARG LDFPKVRCII QYDCPGEATE YVHRVGRTAR IGEKGEALLF LQPVEIDYLK DLKKHGATLA EYPLLKVLDK FPLLGNMPRI
501: KKVISLESHP WVISLQRALE FFTYAEPKMK NLAKNAFVSW VRGYAAHKGE LKSIFVVKKL HLGHVAKSFA LKEQPSLVGK SHHKETMKRK RDERQKGQHP
601: KKRKKMSGGN SRMYACLSSS SSVHYIQDEV LLMRWAPSLG AAGLATLPRP EDKGFALEVG VGAAMAAQGS SSSVDSFEAA EAKDGAEEEE EEEEEEEARG
701: A

Best Arabidopsis Sequence Match ( AT2G40700.1 )
(BLAST)

001: MMKRAQQSAR ETKQEAKDAS KAKSGLFASC SFSSLGLDTK LSDQLKERMG FEAPTLVQAQ AIPVILSGRD VLVNAPTGTG KTIAYLAPLI HHLQGHSPKV
101: DRSHGTFALV IVPTRELCLQ VYETLEKLLH RFHWIVPGYV MGGEKKAKEK ARLRKGISIL IATPGRLLDH LKNTASFVHK NLRWVIFDEA DSILELGYGK
201: EIEQIIKLLG SGQNEQGEED DIVPKGIQKQ NLLLSATLND KVNDLAKLSL DDPVMIGLDN TKLQQNLSIE SPAAPDSDAE DMVIHVNKSA NPLSEDYGIP
301: SQLVQRYLRV PCGARLVALL SVLKNLFERE ASQKVVVFFS TRDAVDFHYS LLSEFQWPPN SETEEEGTKE LFLKCKTFRL HGSMEQEDRR SAFGTFKTEK
401: QAVLLSTDVA ARGLDFPKVR CIIQYDCPGE ATEYVHRVGR TARIGEKGEA LLFLQPIEID YLKELKKHGA SLTEYPLMKV LDKFPIPGNM PRIKKVLSLE
501: SHPWVISLQR ALESLTYAEP KMKSLAKNAF VSWVRGYAAH KGELKSIFVV KKLHLGHVAK SFALREQPSL VGKSHHKETM KRKRDERQKG QQGKKRKKMS
601: GTGNRSTQKT

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT2G40700]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.