Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82336 | Canola | nucleus | 95.02 | 96.51 |
| CDX99342 | Canola | nucleus | 91.58 | 93.84 |
| CDX92251 | Canola | nucleus | 91.41 | 93.5 |
| CDX95512 | Canola | nucleus | 91.07 | 92.98 |
| Bra001713.1-P | Field mustard | nucleus | 96.22 | 92.41 |
| CDY18530 | Canola | nucleus | 89.86 | 92.08 |
| AT3G18600.1 | Thale cress | nucleus | 83.85 | 85.92 |
| PGSC0003DMT400063252 | Potato | nucleus | 64.95 | 66.78 |
| Solyc03g114370.2.1 | Tomato | nucleus | 64.09 | 65.9 |
| VIT_17s0000g04310.t01 | Wine grape | cytosol | 62.2 | 65.82 |
| KRH62970 | Soybean | nucleus | 59.97 | 64.39 |
| GSMUA_Achr10P... | Banana | cytosol | 57.04 | 64.22 |
| KRH03838 | Soybean | nucleus | 62.71 | 63.48 |
| KRH54795 | Soybean | nucleus | 59.45 | 63.25 |
| KRH56711 | Soybean | nucleus | 61.86 | 62.94 |
| CDY36514 | Canola | nucleus | 59.28 | 59.18 |
| CDY08740 | Canola | nucleus | 59.45 | 58.25 |
| HORVU4Hr1G000640.1 | Barley | cytosol, nucleus | 48.8 | 57.14 |
| TraesCS5A01G114200.1 | Wheat | nucleus | 55.5 | 55.69 |
| TraesCS5B01G120400.1 | Wheat | nucleus | 55.5 | 55.69 |
| TraesCS5D01G127000.1 | Wheat | nucleus | 55.5 | 55.69 |
| GSMUA_Achr7P07500_001 | Banana | cytosol, nucleus, peroxisome | 53.26 | 55.56 |
| TraesCS6D01G292400.1 | Wheat | nucleus | 52.06 | 54.79 |
| TraesCS6A01G312900.1 | Wheat | nucleus | 51.72 | 54.43 |
| EER90714 | Sorghum | nucleus | 58.25 | 54.41 |
| Os03t0802700-01 | Rice | nucleus | 54.98 | 54.24 |
| TraesCS6B01G342900.1 | Wheat | nucleus | 50.34 | 53.66 |
| TraesCS5A01G042300.1 | Wheat | nucleus | 52.58 | 53.12 |
| OQU76528 | Sorghum | nucleus | 53.44 | 51.92 |
| TraesCS5D01G050600.1 | Wheat | nucleus | 49.83 | 51.88 |
| TraesCS6A01G356000.1 | Wheat | nucleus | 51.03 | 51.83 |
| Os06t0535100-00 | Rice | nucleus | 51.55 | 51.55 |
| Zm00001d013056_P001 | Maize | nucleus | 57.22 | 50.76 |
| KXG37786 | Sorghum | nucleus | 39.18 | 50.33 |
| Zm00001d000431_P001 | Maize | plastid | 41.92 | 50.21 |
| HORVU5Hr1G010160.3 | Barley | cytosol | 51.89 | 50.17 |
| Zm00001d023501_P001 | Maize | nucleus | 51.2 | 49.42 |
| TraesCS7A01G313300.1 | Wheat | nucleus | 24.23 | 45.63 |
| TraesCS7B01G213800.1 | Wheat | nucleus | 24.23 | 45.63 |
| TraesCS7D01G309800.1 | Wheat | nucleus | 24.05 | 44.87 |
| CDY42845 | Canola | cytosol | 25.77 | 33.41 |
| CDY47007 | Canola | cytosol | 25.6 | 33.18 |
| CDX96202 | Canola | cytosol | 13.75 | 28.78 |
| CDX81759 | Canola | cytosol | 24.05 | 28.69 |
| CDY52844 | Canola | cytosol | 23.88 | 28.54 |
| CDY17287 | Canola | nucleus | 31.44 | 27.98 |
| CDY40740 | Canola | cytosol | 25.6 | 27.54 |
| CDX79974 | Canola | nucleus | 31.44 | 26.6 |
| CDX70149 | Canola | nucleus | 27.32 | 26.59 |
| CDY14112 | Canola | cytosol | 26.98 | 26.43 |
| CDY04952 | Canola | nucleus | 26.98 | 26.43 |
| CDY44780 | Canola | mitochondrion | 26.12 | 26.3 |
| CDY23886 | Canola | plasma membrane | 31.27 | 25.96 |
| CDY41525 | Canola | mitochondrion | 26.46 | 21.66 |
| CDX84428 | Canola | mitochondrion | 26.29 | 21.64 |
| CDY49890 | Canola | mitochondrion | 24.57 | 18.33 |
| CDY45370 | Canola | mitochondrion | 24.57 | 18.29 |
| CDY40519 | Canola | nucleus | 23.37 | 17.94 |
| CDX69933 | Canola | cytosol | 4.12 | 17.65 |
| CDX79187 | Canola | cytosol | 24.4 | 16.75 |
| CDX68066 | Canola | cytosol | 24.4 | 16.67 |
| CDY50846 | Canola | nucleus | 23.54 | 16.33 |
| CDY53643 | Canola | nucleus | 23.54 | 16.23 |
| CDY52719 | Canola | nucleus, plastid | 22.51 | 15.8 |
| CDY34979 | Canola | nucleus, plastid | 22.34 | 15.62 |
| CDY32273 | Canola | nucleus | 21.82 | 13.91 |
| CDY21554 | Canola | mitochondrion | 26.46 | 11.33 |
| CDX69935 | Canola | mitochondrion | 26.63 | 11.24 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078CIT2 | EnsemblPlants:CDX75974 | ProteinID:CDX75974 | ProteinID:CDX75974.1 |
| ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF4217 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0005524 | EnsemblPlantsGene:GSBRNA2T00124011001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF13959 |
| ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF305 |
| InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SMART:SM01178 | SUPFAM:SSF52540 |
| UniParc:UPI0004EE6DEE | SEG:seg | : | : | : | : |
Description
BnaC03g40570D
Coordinates
chrLK031805:-:2342164..2345725
Molecular Weight (calculated)
65858.8 Da
IEP (calculated)
9.515
GRAVY (calculated)
-0.475
Length
582 amino acids
Sequence
(BLAST)
(BLAST)
001: MVELEKKSSD EVKKRIRKRN RGKKNEQQRA EEEEEEETHM VEEKADKVQN KKEKKVKKVK SQGGDKTEEE VEAKEEEELD EEKKMVVVGK GIMTNETFES
101: LELSEQTFEA IKTMGFEHMT QIQAGSIPPL LEGKDVLGAA RTGSGKTLAF LIPAVELLFK ERFSPRNGTG VIVICPTREL AIQTKNVAEE LLKHHSLTVS
201: MVIGGNNRRT EAQRIANGSN LLIATPGRLL DHLQHTKGFI YKHLKCLVID EADRILEENF EEDMNKILKI LPKTRQTALF SATQTSKVQD LARVSLTSPV
301: LVDVDDGRRK VTNEGLEQGY CVVPSEKRLL LLISFLKKNL NKKIMVFFST CKSVQFHAEI MKLINVESCD IHGGLDQNRR TKTFFDFMKA EKGILLCTDV
401: AARGLDIPSV DWIIQYDPPD KPTEYIHRVG RTARGEGAKG KALLVLIPEE LQFIRYLKAA KVPVKELEFN EKKLLNVRSA LEKYVANDYN LNKIAKEAYR
501: AYIAAYNSHS LKDIFNVHRL DLQAVALSFC FSSPPKVHLN IESGAGKVRK ARNQQGRNGF SPYSPYGKGK GMKCSRLAFL FY
101: LELSEQTFEA IKTMGFEHMT QIQAGSIPPL LEGKDVLGAA RTGSGKTLAF LIPAVELLFK ERFSPRNGTG VIVICPTREL AIQTKNVAEE LLKHHSLTVS
201: MVIGGNNRRT EAQRIANGSN LLIATPGRLL DHLQHTKGFI YKHLKCLVID EADRILEENF EEDMNKILKI LPKTRQTALF SATQTSKVQD LARVSLTSPV
301: LVDVDDGRRK VTNEGLEQGY CVVPSEKRLL LLISFLKKNL NKKIMVFFST CKSVQFHAEI MKLINVESCD IHGGLDQNRR TKTFFDFMKA EKGILLCTDV
401: AARGLDIPSV DWIIQYDPPD KPTEYIHRVG RTARGEGAKG KALLVLIPEE LQFIRYLKAA KVPVKELEFN EKKLLNVRSA LEKYVANDYN LNKIAKEAYR
501: AYIAAYNSHS LKDIFNVHRL DLQAVALSFC FSSPPKVHLN IESGAGKVRK ARNQQGRNGF SPYSPYGKGK GMKCSRLAFL FY
001: MVESDKSSVE ELKKRVRKRS RGKKNEQQKA EEKTHTVEEN ADETQKKSEK KVKKVRGKIE EEEEKVEAME DGEDEKNIVI VGKGIMTNVT FDSLDLSEQT
101: SIAIKEMGFQ YMTQIQAGSI QPLLEGKDVL GAARTGSGKT LAFLIPAVEL LFKERFSPRN GTGVIVICPT RELAIQTKNV AEELLKHHSQ TVSMVIGGNN
201: RRSEAQRIAS GSNLVIATPG RLLDHLQNTK AFIYKHLKCL VIDEADRILE ENFEEDMNKI LKILPKTRQT ALFSATQTSK VKDLARVSLT SPVHVDVDDG
301: RRKVTNEGLE QGYCVVPSKQ RLILLISFLK KNLNKKIMVF FSTCKSVQFH TEIMKISDVD VSDIHGGMDQ NRRTKTFFDF MKAKKGILLC TDVAARGLDI
401: PSVDWIIQYD PPDKPTEYIH RVGRTARGEG AKGKALLVLI PEELQFIRYL KAAKVPVKEL EFNEKRLSNV QSALEKCVAK DYNLNKLAKD AYRAYLSAYN
501: SHSLKDIFNV HRLDLLAVAE SFCFSSPPKV NLNIESGAGK VRKARKQQGR NGFSPYSPYG KSTPTKEA
101: SIAIKEMGFQ YMTQIQAGSI QPLLEGKDVL GAARTGSGKT LAFLIPAVEL LFKERFSPRN GTGVIVICPT RELAIQTKNV AEELLKHHSQ TVSMVIGGNN
201: RRSEAQRIAS GSNLVIATPG RLLDHLQNTK AFIYKHLKCL VIDEADRILE ENFEEDMNKI LKILPKTRQT ALFSATQTSK VKDLARVSLT SPVHVDVDDG
301: RRKVTNEGLE QGYCVVPSKQ RLILLISFLK KNLNKKIMVF FSTCKSVQFH TEIMKISDVD VSDIHGGMDQ NRRTKTFFDF MKAKKGILLC TDVAARGLDI
401: PSVDWIIQYD PPDKPTEYIH RVGRTARGEG AKGKALLVLI PEELQFIRYL KAAKVPVKEL EFNEKRLSNV QSALEKCVAK DYNLNKLAKD AYRAYLSAYN
501: SHSLKDIFNV HRLDLLAVAE SFCFSSPPKV NLNIESGAGK VRKARKQQGR NGFSPYSPYG KSTPTKEA
Arabidopsis Description
RH51DEAD-box ATP-dependent RNA helicase 51 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIH9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.