Factsheet for Zm00001d023501_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G000640.1	Barley	cytosol, nucleus	68.99	83.7
OQU76528	Sorghum	nucleus	82.42	82.97
TraesCS6D01G292400.1	Wheat	nucleus	72.8	79.39
TraesCS5A01G042300.1	Wheat	nucleus	75.46	78.99
TraesCS6B01G342900.1	Wheat	nucleus	71.48	78.94
TraesCS6A01G312900.1	Wheat	nucleus	72.31	78.84
TraesCS6A01G356000.1	Wheat	nucleus	73.96	77.84
TraesCS5D01G050600.1	Wheat	nucleus	70.48	76.03
HORVU5Hr1G010160.3	Barley	cytosol	73.8	73.92
Zm00001d000431_P001	Maize	plastid	55.72	69.14
Os06t0535100-00	Rice	nucleus	64.84	67.18
GSMUA_Achr10P...	Banana	cytosol	55.72	64.99
Zm00001d013056_P001	Maize	nucleus	70.32	64.63
VIT_17s0000g04310.t01	Wine grape	cytosol	54.89	60.18
Solyc03g114370.2.1	Tomato	nucleus	54.73	58.3
PGSC0003DMT400063252	Potato	nucleus	54.06	57.6
KRH62970	Soybean	nucleus	51.58	57.38
GSMUA_Achr7P07500_001	Banana	cytosol, nucleus, peroxisome	52.9	57.17
KRH54795	Soybean	nucleus	51.74	57.04
KRH56711	Soybean	nucleus	53.4	56.29
KRH03838	Soybean	nucleus	53.23	55.83
Bra037574.1-P	Field mustard	nucleus	49.25	52.47
CDY18530	Canola	nucleus	49.25	52.29
Bra022336.1-P	Field mustard	nucleus	49.09	52.11
CDX92251	Canola	nucleus	49.09	52.02
CDX99342	Canola	nucleus	48.92	51.94
CDX95512	Canola	nucleus	49.09	51.93
CDX82336	Canola	nucleus	49.25	51.83
AT3G18600.1	Thale cress	nucleus	48.76	51.76
CDX75974	Canola	nucleus	49.42	51.2
CDY36514	Canola	nucleus	47.6	49.23
Bra001713.1-P	Field mustard	nucleus	49.25	49.01
Bra024428.1-P	Field mustard	nucleus	47.93	48.9
CDY08740	Canola	nucleus	47.93	48.65
AT5G65900.1	Thale cress	nucleus	47.6	45.34
Zm00001d027279_P001	Maize	nucleus	14.1	29.82
Zm00001d010225_P001	Maize	plasma membrane	25.37	29.77
Zm00001d044203_P001	Maize	plasma membrane	26.87	28.93
Zm00001d014787_P001	Maize	nucleus	22.06	28.6
Zm00001d024719_P001	Maize	nucleus	15.59	27.81
Zm00001d044208_P001	Maize	plastid	26.87	27.65
Zm00001d022246_P001	Maize	cytosol	22.22	25.77
Zm00001d048477_P001	Maize	plastid	7.79	25.13
Zm00001d041799_P001	Maize	cytosol	10.78	24.62
Zm00001d006497_P002	Maize	nucleus	26.87	21.66
Zm00001d039746_P001	Maize	nucleus	24.54	20.41
Zm00001d002007_P002	Maize	cytosol, mitochondrion, plastid	11.28	18.78
Zm00001d018516_P002	Maize	mitochondrion	25.37	18.7
Zm00001d021127_P001	Maize	nucleus, plasma membrane	22.72	17.79
Zm00001d006113_P001	Maize	nucleus	22.55	17.24
Zm00001d046097_P001	Maize	mitochondrion	26.2	16.88
Zm00001d050315_P001	Maize	nucleus	22.72	16.31
Zm00001d003031_P002	Maize	nucleus	20.4	14.54
Zm00001d032317_P001	Maize	nucleus	10.28	12.68

Protein Annotations

EntrezGene:103640803	Gene3D:3.40.50.300	MapMan:35.1	ProteinID:AQK39425.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
InterPro:DUF4217	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:K7TEV9	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFAM:PF13959	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF305	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SMART:SM01178	SUPFAM:SSF52540	UniParc:UPI0002217367	EnsemblPlantsGene:Zm00001d023501	EnsemblPlants:Zm00001d023501_P001	EnsemblPlants:Zm00001d023501_T001
SEG:seg	:	:	:	:	:

Description

Putative DEAD-box ATP-dependent RNA helicase family protein

Coordinates

chr10:+:7467251..7471987

Molecular Weight (calculated)

68558.8 Da

IEP (calculated)

9.855

GRAVY (calculated)

-0.501

Length

603 amino acids

Sequence
(BLAST)

001: MYLTSCSRLA QPSKSSVALP ESGESMYAAA RVEVEADRKK EKVDETERMA REKKNTHEKE QIRKVVMGKR KRNEDELGME EKQMIAEKEK EEKVKKGNGG
101: GILTTKLFSE LYISELTAKA IREMNYSHLT EIQARSIPHL MLGNDVLGSA KTGSGKTLAF LIPAIELLHK ASFMPRNGTG VIVVCPTREL AMQTHNVAKE
201: LMKYHSQTLG YVIGGTNMRN DANQLLKGIN LLVATPGRLL DHLRNTRSFN YKRLQCLIID EADRILEQNF EEDMKQIFKR LPQDRQTVLF SATQNQKVVE
301: FANFTFGQNE ERQKKLVYVG VDDSKLKPTV EGLQQGYCVI PSEKRFLVLY AFLRRMQLRK EDLKVMVFFS SCSSVKFHAE FLNFLGIGCY DIHGQQKQQK
401: RTSTFFQFLK EKNGILLCTN VAARGLDIPD VDYIVQFDPP DDPKDYIHRV GRTARGDKGK GSALLFLLPE ELKLLIYLQA AKISLTEYVF SEKHVPKSQS
501: QLEDVVGGNY FLNQSAKEAY RSYLLSYNSH SMKDIFDVHQ LDLKKVAASF CFKNPPKVNL DLDSSSSKHR KMRKADGANR HGIGPSTPYG RSGRYGSRQL
601: ARF

Best Arabidopsis Sequence Match ( AT3G18600.1 )
(BLAST)

001: MVESDKSSVE ELKKRVRKRS RGKKNEQQKA EEKTHTVEEN ADETQKKSEK KVKKVRGKIE EEEEKVEAME DGEDEKNIVI VGKGIMTNVT FDSLDLSEQT
101: SIAIKEMGFQ YMTQIQAGSI QPLLEGKDVL GAARTGSGKT LAFLIPAVEL LFKERFSPRN GTGVIVICPT RELAIQTKNV AEELLKHHSQ TVSMVIGGNN
201: RRSEAQRIAS GSNLVIATPG RLLDHLQNTK AFIYKHLKCL VIDEADRILE ENFEEDMNKI LKILPKTRQT ALFSATQTSK VKDLARVSLT SPVHVDVDDG
301: RRKVTNEGLE QGYCVVPSKQ RLILLISFLK KNLNKKIMVF FSTCKSVQFH TEIMKISDVD VSDIHGGMDQ NRRTKTFFDF MKAKKGILLC TDVAARGLDI
401: PSVDWIIQYD PPDKPTEYIH RVGRTARGEG AKGKALLVLI PEELQFIRYL KAAKVPVKEL EFNEKRLSNV QSALEKCVAK DYNLNKLAKD AYRAYLSAYN
501: SHSLKDIFNV HRLDLLAVAE SFCFSSPPKV NLNIESGAGK VRKARKQQGR NGFSPYSPYG KSTPTKEA

Arabidopsis Description

RH51DEAD-box ATP-dependent RNA helicase 51 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIH9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.