Factsheet for Zm00001d032317_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050315_P001	Maize	nucleus	92.84	54.05
OQU80427	Sorghum	nucleus	94.07	53.93
Os08t0416100-01	Rice	nucleus	82.21	47.24
TraesCS4D01G337100.1	Wheat	nucleus	80.16	46.06
TraesCS4B01G341100.1	Wheat	plastid	79.96	45.78
TraesCS5A01G510500.1	Wheat	nucleus	79.75	45.77
HORVU4Hr1G083970.6	Barley	nucleus	80.37	45.02
Solyc10g009070.2.1	Tomato	nucleus	60.74	37.83
GSMUA_Achr9P14580_001	Banana	nucleus	63.39	37.76
KRH64859	Soybean	nucleus	59.3	37.32
KRH09570	Soybean	nucleus	58.9	37.07
Bra003691.1-P	Field mustard	cytosol	59.1	33.92
CDX68066	Canola	cytosol	58.9	33.8
CDX79187	Canola	cytosol	58.28	33.61
AT1G77030.1	Thale cress	nucleus	57.67	33.37
Zm00001d048477_P001	Maize	plastid	7.57	19.79
Zm00001d010225_P001	Maize	plasma membrane	15.34	14.59
Zm00001d014787_P001	Maize	nucleus	13.5	14.19
Zm00001d000431_P001	Maize	plastid	10.84	10.91
Zm00001d022246_P001	Maize	cytosol	11.25	10.58
Zm00001d021127_P001	Maize	nucleus, plasma membrane	16.56	10.52
Zm00001d013056_P001	Maize	nucleus	13.91	10.37
Zm00001d024719_P001	Maize	nucleus	7.16	10.36
Zm00001d023501_P001	Maize	nucleus	12.68	10.28
Zm00001d006113_P001	Maize	nucleus	16.56	10.27
Zm00001d044203_P001	Maize	plasma membrane	11.66	10.18
Zm00001d039746_P001	Maize	nucleus	14.93	10.07
Zm00001d044208_P001	Maize	plastid	12.07	10.07
Zm00001d027279_P001	Maize	nucleus	5.73	9.82
Zm00001d006497_P002	Maize	nucleus	13.5	8.82
Zm00001d002007_P002	Maize	cytosol, mitochondrion, plastid	6.13	8.29
Zm00001d003031_P002	Maize	nucleus	13.7	7.92
Zm00001d018516_P002	Maize	mitochondrion	12.88	7.7
Zm00001d046097_P001	Maize	mitochondrion	12.68	6.62
Zm00001d041799_P001	Maize	cytosol	2.45	4.55

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6KPV6	InterPro:DBP10_C	InterPro:DDX54/DBP10	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
ProteinID:ONM04828.1	InterPro:P-loop_NTPase	PFAM:PD024971	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF292	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000844DDDE
EnsemblPlantsGene:Zm00001d032317	EnsemblPlants:Zm00001d032317_P001	EnsemblPlants:Zm00001d032317_T001	SEG:seg	:	:

Description

Putative DEAD-box ATP-dependent RNA helicase 29

Coordinates

chr1:-:221997427..222009371

Molecular Weight (calculated)

55206.3 Da

IEP (calculated)

9.684

GRAVY (calculated)

-0.578

Length

489 amino acids

Sequence
(BLAST)

001: MTLCSVEYVV FDEADSLFSM GSAKHLHDIL KKLSDTRQTL LFSATLPSAL ADFAKAGLRD PHTVRLDLDK KISPDLRLAF FTLRREEKLA ALLYLVRERI
101: SSEEQIIIFV STKHHVEFLN ILFREEGLEP SLSYGAMDQE ARMIHISKFR ARKTMLLIVT DVAARGLDIP LLDNVVNWDF SAKPKPLRPA PTEEELLKDM
201: DGINMKIDQA IANGESVYGR FPQTVLDLAS DGLKEVISGC TELIALEKPC ANAFRLYLKT RSMPSKESIK RGSNQWLDVM KKKREVHEGI INLVHQKSSE
301: DPRPEVEEVD DIPNWEKKEV CGKKRKLQNF RDEDYYISSV PQNHHLEAGL SVRDNEGFVE NRLDAAVLDL VDDEASGMQA QRSRYHWMKN KFVKLNAGDR
401: VTATGKAGIR EATRSISRGH GHRSIPNANV PSEIRNPEQM QKSRQQKAME ITRLKNKSAK DGKFQKNRRP DGNGFSKGAG GKGKGKGGR

Best Arabidopsis Sequence Match ( AT1G77030.1 )
(BLAST)

001: MVEGKGFLVS SVTELHRKEK QKKKGKSGGF ESLNLGPNVF NAIKKKGYKV PTPIQRKTMP LILSGVDVVA MARTGSGKTA AFLIPMLEKL KQHVPQGGVR
101: ALILSPTRDL AEQTLKFTKE LGKFTDLRVS LLVGGDSMED QFEELTKGPD VIIATPGRLM HLLSEVDDMT LRTVEYVVFD EADSLFGMGF AEQLHQILTQ
201: LSENRQTLLF SATLPSALAE FAKAGLREPQ LVRLDVENKI SPDLKLSFLT VRPEEKYSAL LYLVREHISS DQQTLIFVST KHHVEFVNSL FKLENIEPSV
301: CYGDMDQDAR KIHVSRFRAR KTMLLIVTDI AARGIDIPLL DNVINWDFPP RPKIFVHRVG RAARAGRTGC AYSFVTPEDM PYMLDLHLFL SKPVRPAPTE
401: DEVLKNMEEV MTKTSQAIDS GVTVYGRFPQ KTIDLIFNRT REMIDSSAEL DSLERTSTKA FRLYSKTKPS PSKESIRRAK DLPREGLHPI FRSIIETGEL
501: EAMSFFQKIK NFRPKQTILE AEGEVAKSKH VKGPAGQWVD VMKKKRAIHE EIINTRHQQN QKTSNNHLEM EAEPTTSFVD GTVEGSKVSG KKRKAQETFK
601: DDEFFISSIP VNHHSEAGLS LRGNEGFGSN RLDAAVLDLV ADDGQGIKQQ QSNYHWDKKG KKYIKLNNGD RVTASGKIKT ESGAKATAKK TGIYKRWQER
701: SHKKVSRDSG DADETTRMSG RGGRDGKRRQ GSVPNAHVRS EIKDLDQVRK ERQQKANKVS YLQSKRGGRG GRGGARGGRG GGARGGRGGS RDFGGGGRDF
801: GSSSDRGGRS GGRDFGGRRG GASTSSRGGK RGGGRGGGGK RGRGR

Arabidopsis Description

RH29Putative DEAD-box ATP-dependent RNA helicase 29 [Source:UniProtKB/Swiss-Prot;Acc:O49289]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.