Factsheet for Zm00001d006497_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99450	Sorghum	nucleus	91.84	92.21
Os07t0517000-01	Rice	nucleus	53.88	76.91
TraesCS2A01G222000.1	Wheat	mitochondrion, nucleus	77.01	75.89
TraesCS2B01G247500.1	Wheat	nucleus	77.01	75.49
TraesCS2D01G228000.1	Wheat	nucleus	77.01	75.39
GSMUA_Achr6P00390_001	Banana	cytosol, mitochondrion	54.14	55.18
KRH73730	Soybean	nucleus	52.54	52.68
PGSC0003DMT400057202	Potato	nucleus	52.67	52.19
Solyc07g064520.2.1	Tomato	nucleus	52.27	51.86
KRH14417	Soybean	cytosol, nucleus	35.43	50.19
CDY17287	Canola	nucleus	43.72	50.0
AT5G54910.1	Thale cress	nucleus	48.13	48.71
Bra002946.1-P	Field mustard	nucleus	48.13	48.39
Zm00001d027279_P001	Maize	nucleus	11.76	30.88
Zm00001d000431_P001	Maize	plastid	18.85	29.01
Zm00001d024719_P001	Maize	nucleus	12.83	28.4
Zm00001d023501_P001	Maize	nucleus	21.66	26.87
Zm00001d013056_P001	Maize	nucleus	23.53	26.83
Zm00001d014787_P001	Maize	nucleus	16.04	25.81
Zm00001d041799_P001	Maize	cytosol	8.82	25.0
Zm00001d010225_P001	Maize	plasma membrane	16.58	24.12
Zm00001d044203_P001	Maize	plasma membrane	18.05	24.11
Zm00001d044208_P001	Maize	plastid	18.45	23.55
Zm00001d022246_P001	Maize	cytosol	16.18	23.27
Zm00001d002007_P002	Maize	cytosol, mitochondrion, plastid	10.83	22.38
Zm00001d039746_P001	Maize	nucleus	21.12	21.79
Zm00001d048477_P001	Maize	plastid	5.21	20.86
Zm00001d021127_P001	Maize	nucleus, plasma membrane	18.72	18.18
Zm00001d050315_P001	Maize	nucleus	19.65	17.5
Zm00001d006113_P001	Maize	nucleus	18.32	17.36
Zm00001d018516_P002	Maize	mitochondrion	18.18	16.63
Zm00001d003031_P002	Maize	nucleus	17.38	15.37
Zm00001d046097_P001	Maize	mitochondrion	18.85	15.06
Zm00001d032317_P001	Maize	nucleus	8.82	13.5

Protein Annotations

EntrezGene:100501177	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6EX32	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
InterPro:DUF4217	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	ProteinID:ONM24052.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFAM:PF13959	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF54
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SMART:SM01178	SUPFAM:SSF52540	UniParc:UPI000842E7C9
EnsemblPlantsGene:Zm00001d006497	EnsemblPlants:Zm00001d006497_P002	EnsemblPlants:Zm00001d006497_T002	SEG:seg	:	:

Description

DEAD-box ATP-dependent RNA helicase 32

Coordinates

chr2:-:209870356..209873965

Molecular Weight (calculated)

84694.3 Da

IEP (calculated)

9.661

GRAVY (calculated)

-0.524

Length

748 amino acids

Sequence
(BLAST)

001: MRRPQRRVAA KQTRLREVDE IRLLNEWIDA GKPLPRTKLL PPSKSAGPVP TAGEHPEYGA CTLFDELPLS QKTKDGLRKA GFTEMSEIQR AALPHALCGR
101: DILGAAKTGS GKTLAFVIPL IEKLYRERWG PEDGVGCIIL SPTNDLAGQI FEVIKKVGQF HNFSGGVIVG KRKGIEIEKE RVNSLNILVC TPGRLVQHFN
201: ETANFDCSQL QVFKLILFYD YQILDHGFRN QVDAIISQIP KVRQTLLFSA TQTKSVKDLA RVSLRDPEYI SVHEEARTAT PDTLEQYAMI VPLEQKLNML
301: WSFIKRHLNS KTIVFLSSVK QVKFVYEIFK KLRPGIPLKC MHGRMKHVVQ QAIVADFNEA TSVLFSTDIT SRGLDIKNVD WVVQVDCPEN IDNYIHRVGR
401: TARYNKKGKS LIFLCPEEEA MLEKLKATES KIPIHIRKPK AEQLEQISQS IASVLVKFPN LQELGKRAFV TYLKAVYLQK DKKVFNLSRF SAEQFAAYAA
501: SLGLPVTPKI RFISHKKNVS KKDMEDIDMK QMKSSLEHEV TITPKINIDL TLCDGDDDIL YPKKPTADAN MDDRLDDVLH PKESATDTNV TGLERPFKKK
601: KLKINVNRPS GTRVKYDDEG NAIPPLASVA EEVSLEPVVH KDKISQRYAE MLREMQKHDK EDKLEHKKTL REKKLQKKMK LKRKRQEDTG AGSEEDSGSE
701: SDRGQDTANK GKKRYFNSDD EDNDAAKDGD VLAQQEALAL KLLSNMHS

Best Arabidopsis Sequence Match ( AT5G54910.1 )
(BLAST)

001: MVKIKKTKGM RKQIRLNEVE EINLLKQWIE SQKPDSGFNP LSLRPLPKDS KIGKSEDGKN GTVFSRYAGV RKFAQLPISD KTKRGLKDAK YVDMTDVQSA
101: AIPHALCGRD ILGAARTGSG KTLAFVIPIL EKLHRERWSP EDGVGCIIIS PTRELAAQTF GVLNKVGKFH KFSAGLLIGG REGVDVEKER VHEMNILVCA
201: PGRLLQHMDE TPNFECPQLQ ILILDEADRV LDSAFKGQLD PIISQLPKHR QTLLFSATQT KKVKDLARLS LRDPEYISVH AEAVTATPTS LMQTVMIVPV
301: EKKLDMLWSF IKTHLNSRIL VFLSTKKQVK FVHEAFNKLR PGIPLKSLHG KMSQEKRMGV YSQFIERQSV LFCTDVLARG LDFDKAVDWV VQVDCPEDVA
401: SYIHRVGRTA RFYTQGKSLL FLTPSEEKMI EKLQEAKVPI KLIKANNQKL QEVSRLLAAL LVKYPDLQGV AQRAFITYLR SIHKRRDKEI FDVSKLSIEN
501: FSASLGLPMT PRIRFTNLKT KKKGVYESSI AMEIENAQEY EAPLVVKKDL LGEDLEEEDF ALKPRKEGKV VEKSTKEEEV LIPGNRVLKN KKLKINLHRP
601: FGSRVVLDEE GNSLAPLASV AAEAGTEVAL DEERMNDYYK KVGAEMRKAD IEDKKVDKER RREKRMKQKI KRKRGAMEDE EEEEEEDHDG SGSSDDETGR
701: NSKRAKKIVS DNEENGGKIN TDSLSVADLE EMALKFITQ

Arabidopsis Description

RH32DEAD-box ATP-dependent RNA helicase 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFT9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.