Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17287 | Canola | nucleus | 72.67 | 82.11 |
| Bra002946.1-P | Field mustard | nucleus | 81.33 | 80.78 |
| KRH73730 | Soybean | nucleus | 60.08 | 59.52 |
| PGSC0003DMT400057202 | Potato | nucleus | 59.68 | 58.41 |
| Solyc07g064520.2.1 | Tomato | nucleus | 59.54 | 58.36 |
| KRH14417 | Soybean | cytosol, nucleus | 39.78 | 55.68 |
| GSMUA_Achr6P00390_001 | Banana | cytosol, mitochondrion | 55.07 | 55.45 |
| EER99450 | Sorghum | nucleus | 49.8 | 49.4 |
| Zm00001d006497_P002 | Maize | nucleus | 48.71 | 48.13 |
| TraesCS2B01G247500.1 | Wheat | nucleus | 49.12 | 47.58 |
| TraesCS2A01G222000.1 | Wheat | mitochondrion, nucleus | 48.85 | 47.56 |
| TraesCS2D01G228000.1 | Wheat | nucleus | 48.71 | 47.12 |
| Os07t0517000-01 | Rice | nucleus | 32.07 | 45.23 |
| AT3G18600.1 | Thale cress | nucleus | 26.52 | 34.51 |
| AT5G65900.1 | Thale cress | nucleus | 26.66 | 31.12 |
| AT5G60990.1 | Thale cress | nucleus | 18.27 | 29.61 |
| AT2G40700.1 | Thale cress | nucleus | 21.92 | 26.56 |
| AT5G08620.1 | Thale cress | nucleus | 19.89 | 26.11 |
| AT1G71370.1 | Thale cress | nucleus | 19.62 | 25.99 |
| AT5G05450.1 | Thale cress | nucleus | 20.3 | 25.3 |
| AT1G71280.1 | Thale cress | nucleus | 15.83 | 25.16 |
| AT1G16280.1 | Thale cress | nucleus | 16.64 | 25.05 |
| AT5G63630.2 | Thale cress | mitochondrion, plastid | 20.03 | 20.67 |
| AT4G16630.1 | Thale cress | nucleus | 19.89 | 18.63 |
| AT1G63250.1 | Thale cress | mitochondrion | 19.62 | 18.17 |
| AT1G77030.1 | Thale cress | nucleus | 20.3 | 17.75 |
| AT2G07750.1 | Thale cress | plastid | 19.89 | 17.4 |
| AT5G08610.1 | Thale cress | mitochondrion, plastid | 19.49 | 16.94 |
| AT3G16840.2 | Thale cress | nucleus | 17.32 | 15.48 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:835582 | ProteinID:AED96555.1 | ArrayExpress:AT5G54910 | EnsemblPlantsGene:AT5G54910 |
| RefSeq:AT5G54910 | TAIR:AT5G54910 | RefSeq:AT5G54910-TAIR-G | EnsemblPlants:AT5G54910.1 | TAIR:AT5G54910.1 | Unigene:At.29471 |
| ProteinID:BAB08770.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF4217 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004004 | GO:GO:0004386 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010501 |
| GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 |
| RefSeq:NP_200302.1 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF13959 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | ScanProsite:PS00039 | PFscan:PS51192 |
| PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF54 | UniProt:Q9FFT9 | InterPro:RNA-helicase_DEAD-box_CS |
| InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SMART:SM01178 | SUPFAM:SSF52540 | UniParc:UPI00000A9B33 |
| SEG:seg | : | : | : | : | : |
Description
RH32DEAD-box ATP-dependent RNA helicase 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFT9]
Coordinates
chr5:-:22298453..22301859
Molecular Weight (calculated)
83586.3 Da
IEP (calculated)
9.703
GRAVY (calculated)
-0.500
Length
739 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKIKKTKGM RKQIRLNEVE EINLLKQWIE SQKPDSGFNP LSLRPLPKDS KIGKSEDGKN GTVFSRYAGV RKFAQLPISD KTKRGLKDAK YVDMTDVQSA
101: AIPHALCGRD ILGAARTGSG KTLAFVIPIL EKLHRERWSP EDGVGCIIIS PTRELAAQTF GVLNKVGKFH KFSAGLLIGG REGVDVEKER VHEMNILVCA
201: PGRLLQHMDE TPNFECPQLQ ILILDEADRV LDSAFKGQLD PIISQLPKHR QTLLFSATQT KKVKDLARLS LRDPEYISVH AEAVTATPTS LMQTVMIVPV
301: EKKLDMLWSF IKTHLNSRIL VFLSTKKQVK FVHEAFNKLR PGIPLKSLHG KMSQEKRMGV YSQFIERQSV LFCTDVLARG LDFDKAVDWV VQVDCPEDVA
401: SYIHRVGRTA RFYTQGKSLL FLTPSEEKMI EKLQEAKVPI KLIKANNQKL QEVSRLLAAL LVKYPDLQGV AQRAFITYLR SIHKRRDKEI FDVSKLSIEN
501: FSASLGLPMT PRIRFTNLKT KKKGVYESSI AMEIENAQEY EAPLVVKKDL LGEDLEEEDF ALKPRKEGKV VEKSTKEEEV LIPGNRVLKN KKLKINLHRP
601: FGSRVVLDEE GNSLAPLASV AAEAGTEVAL DEERMNDYYK KVGAEMRKAD IEDKKVDKER RREKRMKQKI KRKRGAMEDE EEEEEEDHDG SGSSDDETGR
701: NSKRAKKIVS DNEENGGKIN TDSLSVADLE EMALKFITQ
101: AIPHALCGRD ILGAARTGSG KTLAFVIPIL EKLHRERWSP EDGVGCIIIS PTRELAAQTF GVLNKVGKFH KFSAGLLIGG REGVDVEKER VHEMNILVCA
201: PGRLLQHMDE TPNFECPQLQ ILILDEADRV LDSAFKGQLD PIISQLPKHR QTLLFSATQT KKVKDLARLS LRDPEYISVH AEAVTATPTS LMQTVMIVPV
301: EKKLDMLWSF IKTHLNSRIL VFLSTKKQVK FVHEAFNKLR PGIPLKSLHG KMSQEKRMGV YSQFIERQSV LFCTDVLARG LDFDKAVDWV VQVDCPEDVA
401: SYIHRVGRTA RFYTQGKSLL FLTPSEEKMI EKLQEAKVPI KLIKANNQKL QEVSRLLAAL LVKYPDLQGV AQRAFITYLR SIHKRRDKEI FDVSKLSIEN
501: FSASLGLPMT PRIRFTNLKT KKKGVYESSI AMEIENAQEY EAPLVVKKDL LGEDLEEEDF ALKPRKEGKV VEKSTKEEEV LIPGNRVLKN KKLKINLHRP
601: FGSRVVLDEE GNSLAPLASV AAEAGTEVAL DEERMNDYYK KVGAEMRKAD IEDKKVDKER RREKRMKQKI KRKRGAMEDE EEEEEEDHDG SGSSDDETGR
701: NSKRAKKIVS DNEENGGKIN TDSLSVADLE EMALKFITQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.