Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G71280.1 | Thale cress | nucleus | 79.39 | 95.27 |
| AT5G05450.1 | Thale cress | nucleus | 74.55 | 70.15 |
| CDX96202 | Canola | cytosol | 32.08 | 64.39 |
| VIT_13s0067g01900.t01 | Wine grape | nucleus | 65.77 | 61.68 |
| KRG97683 | Soybean | nucleus | 64.16 | 60.78 |
| Solyc02g078880.2.1 | Tomato | nucleus | 62.37 | 58.59 |
| Zm00001d027279_P001 | Maize | nucleus | 28.67 | 56.14 |
| Zm00001d024719_P001 | Maize | nucleus | 33.69 | 55.62 |
| PGSC0003DMT400057606 | Potato | nucleus | 61.83 | 55.38 |
| KRH31184 | Soybean | nucleus | 62.72 | 52.63 |
| EES00264 | Sorghum | nucleus, plastid | 58.78 | 50.93 |
| GSMUA_Achr8P01870_001 | Banana | cytosol | 59.14 | 50.69 |
| TraesCS3B01G116900.1 | Wheat | plastid | 58.06 | 50.39 |
| Os01t0164500-01 | Rice | plastid | 58.42 | 50.39 |
| Zm00001d041799_P001 | Maize | cytosol | 23.84 | 50.38 |
| TraesCS3A01G100100.1 | Wheat | plastid | 58.06 | 50.31 |
| TraesCS3D01G100800.1 | Wheat | plastid | 57.71 | 50.08 |
| HORVU3Hr1G018130.7 | Barley | plastid | 58.06 | 47.86 |
| Zm00001d039746_P001 | Maize | nucleus | 58.6 | 45.1 |
| Zm00001d002007_P002 | Maize | cytosol, mitochondrion, plastid | 25.27 | 38.95 |
| AT5G60990.1 | Thale cress | nucleus | 23.84 | 29.17 |
| AT3G18600.1 | Thale cress | nucleus | 26.52 | 26.06 |
| AT1G16280.1 | Thale cress | nucleus | 22.04 | 25.05 |
| AT5G08620.1 | Thale cress | nucleus | 23.66 | 23.45 |
| AT2G40700.1 | Thale cress | nucleus | 25.45 | 23.28 |
| AT5G65900.1 | Thale cress | nucleus | 25.09 | 22.12 |
| AT5G54910.1 | Thale cress | nucleus | 25.99 | 19.62 |
| AT5G63630.2 | Thale cress | mitochondrion, plastid | 24.37 | 18.99 |
| AT4G16630.1 | Thale cress | nucleus | 24.55 | 17.36 |
| AT1G63250.1 | Thale cress | mitochondrion | 24.01 | 16.79 |
| AT1G77030.1 | Thale cress | nucleus | 24.91 | 16.45 |
| AT5G08610.1 | Thale cress | mitochondrion, plastid | 24.73 | 16.24 |
| AT2G07750.1 | Thale cress | plastid | 23.84 | 15.74 |
| AT3G16840.2 | Thale cress | nucleus | 21.86 | 14.75 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:843478 | ProteinID:AAG51820.1 | ProteinID:AEE35194.1 | EMBL:AK118294 |
| ArrayExpress:AT1G71370 | EnsemblPlantsGene:AT1G71370 | RefSeq:AT1G71370 | TAIR:AT1G71370 | RefSeq:AT1G71370-TAIR-G | EnsemblPlants:AT1G71370.1 |
| TAIR:AT1G71370.1 | Unigene:At.70349 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF4217 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004004 | GO:GO:0004386 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005730 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0010501 | GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR014014 | RefSeq:NP_177293.1 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF13959 |
| ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF2 |
| UniProt:Q8GXD6 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SMART:SM01178 |
| SUPFAM:SSF52540 | UniParc:UPI00000A304C | SEG:seg | : | : | : |
Description
RH49DEAD-box ATP-dependent RNA helicase 49 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXD6]
Coordinates
chr1:-:26897005..26899434
Molecular Weight (calculated)
62823.2 Da
IEP (calculated)
9.516
GRAVY (calculated)
-0.314
Length
558 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSPPKTIT KALPRFSELK PPLSEDIIEA LDRSGFEVCT PVQAETIPFL CSHKDVVVDA ATGSGKTLAF LLPFIEIIRR SNSYPPKPHQ VMGVIISPTR
101: ELSAQIHKVA EPFVSTLPNV NSVLLVGGRE VEADMNTLEE EGANLLIGTP GRLSDMMKRM EFLDFRNLEI LILDEADRLL DMGFQKQVNY IISRLPKQRR
201: TGLFSATQTQ AVADLAKAGL RNAMEVISGA ESKSKTSSGL YCEYLKCEAD QKSSQLVHLL IENKNKKLVV FFMTCACVDY WGLVLSKIPT LKSISFFSTH
301: GKMDQKGRDT ALASFTEASS GVLLCTDVAA RGLDIPGIDY VVQYDPPQDP DVFIHRVGRT ARMERQGRAI VFLMPKETDY VEFMRIRRVP LQERKCSENA
401: SDVIPIIRSL AIKDRAVLEK GLQAFVSFVR AYKEHHCSYI FSWKGLEIGK LAMGYGILSF PYISEVKQDR IGIVGFTPVQ GITFEDIKYK NKSREKQRQQ
501: NLLARKDKLQ QEKRGKRKKS SKEAVDDSNK ASRKRKLTGR QRQTIQTAQD EEEMNLRL
101: ELSAQIHKVA EPFVSTLPNV NSVLLVGGRE VEADMNTLEE EGANLLIGTP GRLSDMMKRM EFLDFRNLEI LILDEADRLL DMGFQKQVNY IISRLPKQRR
201: TGLFSATQTQ AVADLAKAGL RNAMEVISGA ESKSKTSSGL YCEYLKCEAD QKSSQLVHLL IENKNKKLVV FFMTCACVDY WGLVLSKIPT LKSISFFSTH
301: GKMDQKGRDT ALASFTEASS GVLLCTDVAA RGLDIPGIDY VVQYDPPQDP DVFIHRVGRT ARMERQGRAI VFLMPKETDY VEFMRIRRVP LQERKCSENA
401: SDVIPIIRSL AIKDRAVLEK GLQAFVSFVR AYKEHHCSYI FSWKGLEIGK LAMGYGILSF PYISEVKQDR IGIVGFTPVQ GITFEDIKYK NKSREKQRQQ
501: NLLARKDKLQ QEKRGKRKKS SKEAVDDSNK ASRKRKLTGR QRQTIQTAQD EEEMNLRL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.