CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97683	Soybean	nucleus	84.36	95.25
VIT_13s0067g01900.t01	Wine grape	nucleus	74.14	82.86
Solyc02g078880.2.1	Tomato	nucleus	67.97	76.09
PGSC0003DMT400057606	Potato	nucleus	67.97	72.55
Bra028757.1-P	Field mustard	nucleus	62.26	69.7
CDY04952	Canola	nucleus	62.26	69.7
CDY14112	Canola	cytosol	62.11	69.53
AT5G05450.1	Thale cress	nucleus	61.8	69.31
Bra009114.1-P	Field mustard	nucleus	60.3	67.39
CDX70149	Canola	nucleus	60.6	67.39
GSMUA_Achr8P01870_001	Banana	cytosol	65.41	66.82
AT1G71370.1	Thale cress	nucleus	52.63	62.72
Zm00001d024719_P001	Maize	nucleus	31.58	62.13
Os01t0164500-01	Rice	plastid	60.0	61.67
Zm00001d027279_P001	Maize	nucleus	26.32	61.4
EES00264	Sorghum	nucleus, plastid	58.95	60.87
TraesCS3B01G116900.1	Wheat	plastid	58.65	60.65
TraesCS3A01G100100.1	Wheat	plastid	58.65	60.56
CDX96202	Canola	cytosol	25.26	60.43
TraesCS3D01G100800.1	Wheat	plastid	58.2	60.19
AT1G71280.1	Thale cress	nucleus	41.95	60.0
HORVU3Hr1G018130.7	Barley	plastid	58.8	57.75
Zm00001d041799_P001	Maize	cytosol	21.5	54.17
Zm00001d039746_P001	Maize	nucleus	58.5	53.66
Zm00001d002007_P002	Maize	cytosol, mitochondrion, plastid	24.21	44.48
KRH65120	Soybean	cytosol	22.11	33.49
KRH48210	Soybean	nucleus	14.74	30.62
KRH62970	Soybean	nucleus	23.61	28.97
KRH03838	Soybean	nucleus	24.51	28.35
KRH54795	Soybean	nucleus	23.16	28.15
KRH56711	Soybean	nucleus	24.06	27.97
KRH12590	Soybean	nucleus	22.26	27.26
KRH37970	Soybean	cytosol	12.48	25.94
KRH37539	Soybean	nucleus	20.6	25.42
KRH37947	Soybean	plastid	20.45	23.09
KRH73730	Soybean	nucleus	24.66	21.98
KRH43700	Soybean	cytosol	18.95	21.5
KRH13749	Soybean	cytosol, plastid	18.95	21.32
KRH46113	Soybean	nucleus	24.21	21.27
KRG98832	Soybean	nucleus	24.06	21.08
KRH14417	Soybean	cytosol, nucleus	16.69	21.02
KRH47920	Soybean	nucleus	20.45	19.35
KRH41139	Soybean	nucleus	20.3	19.09
KRH48208	Soybean	nucleus	22.71	18.64
KRH54980	Soybean	nucleus	4.96	18.54
KRH09570	Soybean	nucleus	20.3	17.37
KRH65117	Soybean	plastid	21.5	17.35
KRH64859	Soybean	nucleus	20.15	17.25
KRH06491	Soybean	nucleus	20.45	16.87
KRH59841	Soybean	nucleus	11.43	14.37

Protein Annotations

EntrezGene:100807011	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A0R0HL42	EMBL:ACUP02007128	ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	EnsemblPlantsGene:GLYMA_11G232900	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:KRH31184
ProteinID:KRH31184	ProteinID:KRH31184.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF13959
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF2
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SMART:SM01178	SUPFAM:SSF52540
UniParc:UPI0003DECD9D	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:32824430..32829570

Molecular Weight (calculated)

74381.4 Da

IEP (calculated)

9.384

GRAVY (calculated)

-0.322

Length

665 amino acids

Sequence
(BLAST)

001: MDSEFPNKAL TSVRFSDLNP PLSEPVLQAL SHSGFDFCTP VQAATIPLLC SFKDVAVDAA TGSGKTLAFV IPLVEILRRS SSHPKPHKVL GIIISPTREL
101: STQIYHVAQS FISTLMNVKS MLLVGGAEVK TDIKKIEEEG ANILIGTPGR LYDIMNRMDV LDLKNLEILI LDEADRLLDM GFQKQITSII SLLPKLRRTG
201: LFSATQTEAI EELAKAGLRN PVRVEVRAET KSEKGPASSK QPESSKTPSG LHIEYLECEE DKKPSQLLDI LIKNRSKKII IYFMTCACVD YWGAVLPCLS
301: VLKGFSLIPL HGKMKQSARE KALASFTTLS NGILLCTDVA ARGLDIPGVD CIVQYDPPQD PNVFIHRVGR TARLGKQGHA VVFLLPKEES YVEFLRIRRV
401: PLQERICSDD ATDVVPQIRS AAKKDRDVME KGIKAFVSYI RAYKEHHCSY IFRWKELEIG KLATGFGLLQ LPSMPEVKHH SLSTDGFEPV EDINLVDIKY
501: RDKSREKQRK KNLQAKKEAK EREPKPQKPK KTPIAPTATR KKTARQRRAQ QTMEDEEELM QEYRLLKKLK KGTIDENEYA KLTGAQGDEI IFPQALLVAE
601: NEPPSGLAHS NGWNPLPIFL SIISNSWQPL SYTVTEIASL TSSPSLKNPK RMSSNPCTGK HRFHL

Best Arabidopsis Sequence Match ( AT5G05450.1 )
(BLAST)

001: MDSSANINKA LTETRFSDLE PPLSGDIIEA LNQSDFEFCT PVQAATIPLL CSYKDVAVDA ATGSGKTLAF VVPLVEILRR STSFPPKPHQ VMGVIISPTR
101: ELSTQIYNVA QPFVSTLANV NSVLLVGGRE VKADMKIIEE EGCNVLIGTP GRLSDIMERM EILDFRNLEI LILDEADRLL EMGFQRQVNY IISRLPKQRR
201: TGLFSATQTE GVEELAKAGL RNPVRVEVRA KSKSESSQQL TNSKTPSGLH LEYMECEADK KSSQLVDLLI KNSDKKLIVF FMTCASVDYW GLVLSKIPAL
301: KSISLIPIHG DMKQNARDKA LASFTKASSG ALLCTDVAAR GLDIPGIDYV VQYDPPQDPN MFNHRAGRTA RLGRQGRAIV FLLPKEEAYV EFMRIRRVPL
401: EERKCSEDAS DVIPIIRSAA MKDRAVMEKG LKAFVSFVRA YKEHHCSFIF RWKDLEIGKL AMGYGLLYLP SMSEVKQHRL SSEGFTPVEG VKFEEIKFKD
501: KYREKQRQQN LQVRKEKRQE EKKEKGKRKR VDASASNDPK KASRKLTGKQ RQTIQTAEDE EVMDRDYKLM IKVKKGLIKE DEYERLTGDD DLF

Arabidopsis Description

RH18DEAD-box ATP-dependent RNA helicase 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLB0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.